CV885155

Overview
NameCV885155
Unique NameCV885155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_DICDI (Eukaryotic translation initiation factor 3 subunit E OS=Dictyostelium discoideum GN=eif3e PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.698e-32
Identity = 74/193 (38.34%), Postives = 117/193 (60.62%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRRRPQ------FKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQ 563
            PH+LRYLA A IVNK+++            ++V++QE   Y+DPIT+F++ ++V ++F+ AQ ++  CE+V+ ND FL   V           DEF+ENAR+ +FETYC I + ID+ +L + L ++ E +++WIV  IRN++  AKID+ +  + M   H N Y Q++D TK L  R  ++V  + E    Q
Sbjct:  290 PHILRYLAVAIIVNKKKQQSNVFQRILNALVRVVEQEAYVYRDPITQFISSLFVKFNFEDAQAQLILCEKVLKNDFFLNTCV-----------DEFMENARVCVFETYCNILESIDIDMLCKNLRIDPESSEKWIVEAIRNTRFSAKIDSANNQIKMFTQH-NSYRQVMDKTKALFNRGIEMVVGINESRSQQ 470          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_USTMA (Eukaryotic translation initiation factor 3 subunit E OS=Ustilago maydis GN=INT6 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.718e-29
Identity = 69/166 (41.57%), Postives = 104/166 (62.65%), Query Frame = 3
Query:   39 VNKRRRPQ-FKDFIKVIQQEQNSYK----DPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRT 521
            VNK    Q  KD + +I  E  SY+    DPI +FL+ ++V++DF+ AQ+++   E+V   D FL              +DE +E  R+ I E YCRIH ++D+A L ++LNL+ E+ ++WIVNL+R+++ DAKID K G V M PTHP VY+ +I+ T+G + RT
Sbjct:  308 VNKLSPQQAIKDIVNIIDSE--SYRIAGTDPIVDFLSKLFVDFDFEAAQEQLTLAEQVASKDFFLAD-----------FKDELVEACRVVISEAYCRIHSKVDIADLVKRLNLSKEDGEKWIVNLVRDTRADAKIDFKEGMVFMNPTHPPVYQTIIEKTRGFTFRT 460          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_CRYNE (Eukaryotic translation initiation factor 3 subunit E OS=Cryptococcus neoformans GN=INT6 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.527e-29
Identity = 74/183 (40.44%), Postives = 108/183 (59.02%), Query Frame = 3
Query:    3 PHLLRYLATAFIV--------NKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL--DAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRT 521
            PHLLRYL  A I+        N R R   K+  ++++ E+  Y DPIT FL  V+ ++D   AQ+++   E V+ +D FL      S FA     DEF+ENAR  I E  CR+H+RID+  L++ LNL+ EE ++WIVNLIR+S++  +AKID K   + +   H      LI+ T+GL+ R+
Sbjct:  253 PHLLRYLVAAAIISRRAPKPANVRSRDHVKELTRIVETEEYQYTDPITSFLKDVFADFDLTQAQQRLSVAESVVRSDFFL------SGFA-----DEFVENARWLISEVICRLHRRIDIGQLSKTLNLSNEEGEKWIVNLIRDSRMGVEAKIDLKENMLHITRPHATPTATLIETTRGLAFRS 424          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_MONBE (Eukaryotic translation initiation factor 3 subunit E OS=Monosiga brevicollis GN=13685 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 62/181 (34.25%), Postives = 107/181 (59.12%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRR-RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQL 542
            PHL RY     I+++R+ R    +F+ + +Q+++   DP+  FL  +  ++DF  A++K+++C EV+  D FL +           + DEF+  A+L++FE Y R+H R+ +   A +L  + ++A+ W+V LIR++KLDA+ID  SG + +      VY+ ++D TK L  RTY +V  L
Sbjct:  246 PHLFRYATAVAIMSRRKKRDVMWEFVGIARQDKDLGDDPVVGFLVSLIKDFDFVTAEEKLQQCREVLSKDYFLAE-----------MTDEFINTAQLYLFEVYLRVHSRVSIKNAATRLGKSEDDAEEWLVKLIRDAKLDAQIDPASGEIHITKPVTTVYQHVLDRTKNLQYRTYVIVESL 415          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_SCHPO (Eukaryotic translation initiation factor 3 subunit E OS=Schizosaccharomyces pombe GN=int6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 55/147 (37.41%), Postives = 77/147 (52.38%), Query Frame = 3
Query:    3 PHLLRYLATAFIVN------KRRRPQ------FKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRN 407
            P LLRYL  A + N      K R P+       +D +++I QE   Y DP+T F++ +Y   DF+ AQ  ++ECEEV+  D FL           V L D FLE AR  + E YCRIH  I + VLA KL ++  +    ++ L+ N
Sbjct:  262 PWLLRYLTVAVVTNQNNANQKPRNPRQSYQRRMRDLVRIISQENYEYSDPVTSFISALYTEVDFEKAQHCLRECEEVLKTDFFL-----------VSLCDHFLEGARKLLAEAYCRIHSVISVDVLANKLEMDSAQ----LIQLVEN 393          
The following BLAST results are available for this feature:
BLAST of CV885155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_DICDI3.698e-3238.34Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_USTMA1.718e-2941.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CRYNE6.527e-2940.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MONBE9.426e-2834.25Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SCHPO1.782e-1837.41Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885155 ID=CV885155; Name=CV885155; organism=Citrus sinensis; type=EST; length=799bp
CTCCCCATCTTTTACGCTATTTAGCTACTGCATTCATTGTCAACAAAAGG
AGGAGACCTCAATTCAAAGATTTTATTAAGGTTATCCAGCAAGAGCAAAA
CTCGTACAAAGATCCCATTACAGAGTTTTTGGCATGTGTGTACGTCAATT
ATGACTTTGATGGGGCACAGAAGAAGATGAAGGAGTGTGAAGAAGTGATA
TTGAATGATCCTTTCCTTGGCAAACGAGTTGAAGATAGCAACTTTGCTAC
TGTTCCTTTGAGAGATGAGTTCCTCGAAAATGCTCGGCTATTCATCTTTG
AGACCTATTGTCGAATTCATCAACGCATTGATATGGCAGTGCTTGCTGAG
AAGTTGAATCTAAATTATGAGGAAGCTCAAAGATGGATTGTGAATCTTAT
TCGGAACTCAAAACTTGATGCCAAGATTGATGCAAAGTCGGGAACTGTTA
TCATGGAACCCACCCACCCCAACGTGTATGAGCAATTGATTGACCACACC
AAAGGACTTTCAGGACGTACTTACAAATTAGTCGGTCAACTTCTGGAACA
TGCACAAACACAAGCTGCGCGATAAATTATCAGAAGTACTTGTTGCAAGT
TGTCATCCCTGGAAATTGCTTCTTTAATTAGATTCAGAAGAGAGCAATTC
TATTGATAAATCATTTCATTTCCATTTTTCTTTCAAATTTTGGAAGAGTT
TATGATTATGTCCTCGGTGTTTGCTGTAACTTTGTTTAATTATTCAAAGA
TTAACATGTATCTTTCTGAAAGAGGTCATTCTTGTGAAATTTGTTTGAA
back to top