EY665370

Overview
NameEY665370
Unique NameEY665370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.438e-13
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  220 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQ 522
            KFETLSYLP L+ + + +++ Y++  GW P +E            H  P    G YW MWKL M+G TD   +LKE     K  P + VR  G DN +Q Q
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQ 106          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.453e-13
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            +++ETLSYLPPL+D  + K++ Y++  G+IP +EF                     YWT+WKL ++G   + +VL EV   + +YP  ++R  G DN +Q Q   F+
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN------------EVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFI 102          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.184e-13
Identity = 35/107 (32.71%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            +KFET SYLPPL+D+ + +++ Y + +G+ P +EF               G  +   WT+WKL ++G     +VL E+   ++++P +++R    D+ RQVQ   FL
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFL 101          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.320e-13
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQ 522
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKL M+G TD  +++ E+   ++  P   ++  G DN RQ Q
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQ 113          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.217e-12
Identity = 39/102 (38.24%), Postives = 49/102 (48.04%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQ 522
            +KFET SYLP L  E + K++ Y++  GW P +E            H  P      YW MWKL M+G TD   +L E     K +P   VR  G DN  Q Q
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQ 106          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 1.217e-12
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQ 516
            +KFET SYLP +  + + K++ Y++  GW P +E            H  P      YW MWKL M+G TD   +LKE     K +P + VR  G DN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.542e-12
Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 1
Query:  226 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHF 534
            ET S+LP  + + +  +I Y+I  GW P LE            H++P      YW MWKL M+G  D   VL E+ + +  YP   +R  G DN  Q Q ++F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.626e-12
Identity = 38/102 (37.25%), Postives = 51/102 (50.00%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQ 522
            +KFET SYLP ++   + K++ YL+  GW P +E            H  P +    YW MWKL M+G TD  ++L E     K  P + VR  G DN  Q Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.030e-11
Identity = 40/107 (37.38%), Postives = 52/107 (48.60%), Query Frame = 1
Query:  217 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            +K ET SYLP ++ + +  ++ Y+I  GW P +E            H  P      YW MWKL M+G TDA  VL EV    K  P + VR  G DN  Q Q  + L
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQGANML 111          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  220 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            ++ET SYLPPL+ E +L++I Y++ +GW   LE            H+ P      YW MWK+  +G  D   +L E+   ++ YP   VR  G D   Q + + FL
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFL 108          
The following BLAST results are available for this feature:
BLAST of EY665370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS2_THIFE1.438e-1339.60Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_ANASP2.453e-1334.58Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_CYAPA4.184e-1332.71Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS_PSEHY9.320e-1336.27Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ALVHS1.217e-1238.24Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS1_CHRVI1.217e-1237.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_HYDMR3.542e-1234.95Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_THIDA4.626e-1237.25Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS1_HYDMR1.030e-1137.38Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_CHRVI8.723e-1133.96Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665370 ID=EY665370; Name=EY665370; organism=Citrus sinensis; type=EST; length=998bp
GAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGGCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAAGTT
GGGGAAGTCCAGAAGGAATACCCACTTTCATTCGTCCGAAATTTCGGAAT
TGACAACAAGCGTCAAGTGCAATGGAATCATTTTCTTTGGTGCCAAGCCA
CCAAGCGGTCTAGGTCCCAATTAAATTTGTGTAACCCCCCCGTGCAATAT
TTGTTGAATTATTTTTATGTGGAACCCCCAAAAAGAATCTTTCAATTAAA
GGGGGGGTTCGGTTTGGCGTTTAAATTTGGACTTTAAGGGTGGGGGTTTC
GGGCCGCGCCCAAAATTTTTTTGGGTTTTTCCCCCCAAAAAAAAAAAAAA
AAAAAAAAAAGGGGGGGGGCCCCCTCTAAAAGGAAACCACAGTATATAAC
ACCACGGGGGGGCGGGGACGAACCCCATAAAACCTCCCTTTCTTAAGTGG
GGCCCCCCAAAAAATTTTAAATTTTCCAGGGGGGCCCCCCCTTTTTTTTT
AAACACCCGTCGCGGTGCGGGGGGGGGGAAAAAAAAACCGCCGGGGGGAG
GTTTATCCCCCACACATTTTATTAAATACCCCCCCCCCTTGGTGGCAA
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