EY665370

Overview
NameEY665370
Unique NameEY665370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 6.587e-59
Identity = 104/162 (64.20%), Postives = 133/162 (82.10%), Query Frame = 1
Query:   52 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKL M+GCTD+ QV+KE+ E +KEYP +++R  G DN RQVQ   F+
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFI 166          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.503e-58
Identity = 108/171 (63.16%), Postives = 133/171 (77.78%), Query Frame = 1
Query:   25 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            M+S+A VA   R   AQ +MV  F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE++ SPGYYDGRYWTMWKL M+GCTDA+QV+ EV E +K YP  FVR  G DNKRQVQ   F+
Sbjct:    2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFI 168          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.576e-58
Identity = 103/167 (61.68%), Postives = 132/167 (79.04%), Query Frame = 1
Query:   52 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFLWCQAT 552
            A  A++ Q +MVAPFTGLK+++AFP TKK N   +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKL M+GCTD+ QV+KE+ E +KEYP +++R  G DN RQVQ   F+  + T
Sbjct:    6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPT 171          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.519e-55
Identity = 110/175 (62.86%), Postives = 132/175 (75.43%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            MASSM+ S   A  +R S AQ++MV PF GL SS+AFP T+K   D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E++YLIR+GWIPC+EF  + G+VYRE+H SPGYYDGRYWTMWKL M+GCTD++QVLKEV E  K YP  F R  G DN RQVQ   FL
Sbjct:    1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFL 171          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.286e-54
Identity = 99/156 (63.46%), Postives = 126/156 (80.77%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKL M+GCTDATQVL EV EV+KEYP ++VR  G DN RQVQ   F+
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFI 161          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.740e-54
Identity = 99/156 (63.46%), Postives = 124/156 (79.49%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS++  P + ++ +   S  SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKL M+GCTDATQVL EV EV+KEYP ++VR  G DN RQVQ   F+
Sbjct:    8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFI 162          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 8.332e-54
Identity = 98/156 (62.82%), Postives = 125/156 (80.13%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKL M+GCTDATQVL EV EV+KEYP ++VR  G DN RQVQ   F+
Sbjct:    8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFI 161          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.856e-53
Identity = 97/156 (62.18%), Postives = 121/156 (77.56%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKL M+GCTDATQVLKE+ E +K YP +FVR  G DN RQVQ   F+
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFI 162          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.856e-53
Identity = 97/156 (62.18%), Postives = 121/156 (77.56%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKL M+GCTDATQVLKE+ E +K YP +FVR  G DN RQVQ   F+
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFI 162          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 2.424e-53
Identity = 97/156 (62.18%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS++  P ++++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKL M+GCTDATQVLKE+ E +K YP +FVR  G DN RQVQ   F+
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFI 162          
The following BLAST results are available for this feature:
BLAST of EY665370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS6_FLAPR6.587e-5964.20Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_LEMGI2.503e-5863.16Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_FLATR5.576e-5861.68Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE1.519e-5562.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU1.286e-5463.46Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT3.740e-5463.46Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT8.332e-5462.82Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ1.856e-5362.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI1.856e-5362.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ2.424e-5362.18Ribulose bisphosphate carboxylase small chain A, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665370 ID=EY665370; Name=EY665370; organism=Citrus sinensis; type=EST; length=998bp
GAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGGCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAAGTT
GGGGAAGTCCAGAAGGAATACCCACTTTCATTCGTCCGAAATTTCGGAAT
TGACAACAAGCGTCAAGTGCAATGGAATCATTTTCTTTGGTGCCAAGCCA
CCAAGCGGTCTAGGTCCCAATTAAATTTGTGTAACCCCCCCGTGCAATAT
TTGTTGAATTATTTTTATGTGGAACCCCCAAAAAGAATCTTTCAATTAAA
GGGGGGGTTCGGTTTGGCGTTTAAATTTGGACTTTAAGGGTGGGGGTTTC
GGGCCGCGCCCAAAATTTTTTTGGGTTTTTCCCCCCAAAAAAAAAAAAAA
AAAAAAAAAAGGGGGGGGGCCCCCTCTAAAAGGAAACCACAGTATATAAC
ACCACGGGGGGGCGGGGACGAACCCCATAAAACCTCCCTTTCTTAAGTGG
GGCCCCCCAAAAAATTTTAAATTTTCCAGGGGGGCCCCCCCTTTTTTTTT
AAACACCCGTCGCGGTGCGGGGGGGGGGAAAAAAAAACCGCCGGGGGGAG
GTTTATCCCCCACACATTTTATTAAATACCCCCCCCCCTTGGTGGCAA
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