EY665370

Overview
NameEY665370
Unique NameEY665370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 8.623e-51
Identity = 92/156 (58.97%), Postives = 118/156 (75.64%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKL M+GC   TQV+ EV EV+KEYP  + R  G DN RQVQ   F+
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFI 162          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.005e-48
Identity = 91/166 (54.82%), Postives = 121/166 (72.89%), Query Frame = 1
Query:   52 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            A  A    A++V+ FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R++++SPGYYDGRYW MWKL M+GCT+A+QV+ EV E  K YP +F+R  G DN RQVQ   F+
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFI 166          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.165e-47
Identity = 89/156 (57.05%), Postives = 118/156 (75.64%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK+++YL+R+GWIPCLEF  + G+VYRE+  SP YYDGRYWTMWKL M+GC DATQV KE+ E  K YP +F R  G DN +Q Q   F+
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFI 162          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.683e-46
Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1
Query:  154 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH+KSP YYDGRYWTMWKL M+G TD  QV+KEV EV   YP +FVR  G +N RQVQ   F+
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFI 129          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.870e-46
Identity = 94/183 (51.37%), Postives = 124/183 (67.76%), Query Frame = 1
Query:   13 MASSMIS----SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            MASS+++    +A  A A  +    +++V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R +  SPGYYDGRYW MWKL M+GCT+A+QVL EV E  K YP +F+R  G DN RQVQ   F+
Sbjct:    1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFI 182          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.352e-46
Identity = 86/156 (55.13%), Postives = 112/156 (71.79%), Query Frame = 1
Query:   70 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            + A+  APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK+++YL+R+ W+PCLEF  E G+VYRE+  SP YYDGRYWTMWKL M+GCTDA+QV KE+ E    YP       G DN RQ QW  F+
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFI 160          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.074e-40
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 1
Query:  190 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            M+VWPP GLKKFETLSYLPPL+ E LL E+NYL+  GWIP LEFE++ G+VYREH KSPGYYDGRYWTMWKL M+G TD  QV+ EV EV+K  P +FVR  G ++KR+VQ   F+
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFI 116          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.797e-39
Identity = 83/179 (46.37%), Postives = 112/179 (62.57%), Query Frame = 1
Query:   19 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEY-PLSFVRNFGIDNKRQVQWNHFLWCQAT 552
            +S+++SA V T   AS A  +  +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I+Y+I+SGW PC+EF+++ G V RE    PGYYDGRYWTMWKL M+GCTD+  VL+E+ E +K Y    ++R  G DN RQVQ   F+  Q T
Sbjct:    2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPT 179          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.023e-35
Identity = 68/101 (67.33%), Postives = 84/101 (83.17%), Query Frame = 1
Query:  235 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL 537
            +YLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKL M+GCTDATQV+ EV EV+KEYP ++VR  G DN RQVQ   F+
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFI 100          
BLAST of EY665370 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.582e-28
Identity = 80/198 (40.40%), Postives = 102/198 (51.52%), Query Frame = 1
Query:   13 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLAMYGCTDATQVLKEVGEVQKEYPLSFVRNFGIDNKRQVQWNHFL---------WCQATKRS 561
            +A S +S+A    A        S V P   LK     PA K       + A+       M VW P   K FET SYLPPLSDE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKL M+GC D  QVL+E+    K +P ++VR    DN++QVQ   FL         W  A KRS
Sbjct:    5 IAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSARDWQPANKRS 184          
The following BLAST results are available for this feature:
BLAST of EY665370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_AEGTA8.623e-5158.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH4.005e-4854.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE1.165e-4757.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA1.683e-4667.19Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA2.870e-4651.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY8.352e-4655.13Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL3.074e-4066.38Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA5.797e-3946.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.023e-3567.33Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_CHLRE1.582e-2840.40Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665370 ID=EY665370; Name=EY665370; organism=Citrus sinensis; type=EST; length=998bp
GAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGGCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAAGTT
GGGGAAGTCCAGAAGGAATACCCACTTTCATTCGTCCGAAATTTCGGAAT
TGACAACAAGCGTCAAGTGCAATGGAATCATTTTCTTTGGTGCCAAGCCA
CCAAGCGGTCTAGGTCCCAATTAAATTTGTGTAACCCCCCCGTGCAATAT
TTGTTGAATTATTTTTATGTGGAACCCCCAAAAAGAATCTTTCAATTAAA
GGGGGGGTTCGGTTTGGCGTTTAAATTTGGACTTTAAGGGTGGGGGTTTC
GGGCCGCGCCCAAAATTTTTTTGGGTTTTTCCCCCCAAAAAAAAAAAAAA
AAAAAAAAAAGGGGGGGGGCCCCCTCTAAAAGGAAACCACAGTATATAAC
ACCACGGGGGGGCGGGGACGAACCCCATAAAACCTCCCTTTCTTAAGTGG
GGCCCCCCAAAAAATTTTAAATTTTCCAGGGGGGCCCCCCCTTTTTTTTT
AAACACCCGTCGCGGTGCGGGGGGGGGGAAAAAAAAACCGCCGGGGGGAG
GTTTATCCCCCACACATTTTATTAAATACCCCCCCCCCTTGGTGGCAA
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