CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_MICLU (50S ribosomal protein L15 OS=Micrococcus luteus GN=rplO PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL  R+PKLRG          +Y  VNL  + +A F EG EV+++ L  KGL+      R  P+K+LG GE++  +  KA AFS SA EK++AAG
Sbjct:   54 EGGQLPLQMRLPKLRGFKNPFRT---EYQVVNLDKL-SAHFPEGGEVTVDALVSKGLVR-----RGQPVKVLGTGEITAAVQVKANAFSASAVEKIQAAG 144          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_MICLC (50S ribosomal protein L15 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplO PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL  R+PKLRG          +Y  VNL  + +A F EG EV+++ L  KGL+      R  P+K+LG GE++  +  KA AFS SA EK++AAG
Sbjct:   54 EGGQLPLQMRLPKLRGFKNPFRT---EYQVVNLDKL-SAHFPEGGEVTVDALVSKGLVR-----RGQPVKVLGTGEITAAVQVKANAFSASAVEKIQAAG 144          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_FINM2 (50S ribosomal protein L15 OS=Finegoldia magna (strain ATCC 29328) GN=rplO PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+RR+PK     G  +    +Y  +N++D+    F +G+E++ E L   G   P+  + K  +KILGDGE++KKL  KA  F+ SA+EK+  AG  + V+
Sbjct:   52 EGGQMPLFRRLPK----RGFKNHFAKQYAEINIRDLNC--FEDGEEITPEILANAGFFKPA--KAKDGVKILGDGEITKKLTIKANKFTKSAEEKITKAGGKVEVI 149          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_BACSU (50S ribosomal protein L15 OS=Bacillus subtilis GN=rplO PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL++R+PK     G  +    +Y  VNL  +   GF EG EV+ E L + G+I+    +    +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   51 EGGQMPLFQRLPK----RGFTNINRKEYAVVNLDKLN--GFAEGTEVTPELLLETGVIS----KLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNS3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9311) GN=rplO PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+      H  L       + ++ A   ++ G  V+L++L K G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T  VL
Sbjct:   53 EGGQMPLYRRVPKLK------HFTLVNPKSFTVLNVSALNEIKAGSTVNLDSLVKDGIVTSP----KSPLKILGNGELKAKLTVQAAAFTASARAKIEAAGGTCEVL 149          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNJB (50S ribosomal protein L15 OS=Synechococcus sp. GN=rplO PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PLYRR+PKL+      +    +Y  VNL+ +  A    G EVSLE+L ++G++  +      PLKILGDGE+S  L  +A A + SAK K+EAAG  + +L
Sbjct:   51 EGGQTPLYRRLPKLKHFP--RYRRRLEYTLVNLRAL--ADLPAGSEVSLESLMERGIVTTNDG----PLKILGDGEVSVPLTIRAAAITASAKVKVEAAGGRVEIL 148          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CORU7 (50S ribosomal protein L15 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplO PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  345 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 656
            EGGQMPL  R+PKL+G           +  VN+ D+E A F  G +V++  L   GL+       K P+K+LG+GE+S KLN  A+ FS SAKEK+E AG ++T
Sbjct:   52 EGGQMPLQMRLPKLKGFKNNNKV---IFQVVNVSDLEKA-FPNGGDVAVADLVAAGLVRA-----KQPVKVLGNGEISVKLNVTAQKFSGSAKEKIEKAGGSVT 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_ANOFW (50S ribosomal protein L15 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplO PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L + G+++    + K  +K+LGDGEL+KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   51 EGGQTPLFRRLPK----RGFTNIHRKEYAIVNLEALNR--FEDGTEVTPELLLETGVVS----KLKAGIKVLGDGELTKKLTVKAHKFSASAKEAIEAAGGTTEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROMM (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplO PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKD---IEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+            +  VN K+   +  A   E   G  ++L+TL K G++       K PLK+LG+GEL  KL  +A AF+ +A+ K+EAAG T  +L
Sbjct:   54 EGGQMPLYRRVPKLK-----------HFTTVNSKEFTVVNVAALNELKAGSTINLDTLVKNGVVTSP----KYPLKVLGNGELKVKLTIQAAAFTATARSKIEAAGGTCEIL 150          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_BACLD (50S ribosomal protein L15 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplO PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL++R+PK     G  +    ++  VNL  + +  F EG EV+ E L + G+I+    + K  +KILGDG+L KKL  KA  FS SAK+ +EAAG T  V+
Sbjct:   51 EGGQMPLFQRLPK----RGFTNINRKEFAVVNLDKLNS--FAEGTEVTPELLLETGVIS----KLKSGVKILGDGKLEKKLTVKANKFSASAKQAIEAAGGTAEVI 146          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_MICLU2.751e-1345.0050S ribosomal protein L15 OS=Micrococcus luteus GN... [more]
RL15_MICLC2.751e-1345.0050S ribosomal protein L15 OS=Micrococcus luteus (s... [more]
RL15_FINM22.751e-1340.5750S ribosomal protein L15 OS=Finegoldia magna (str... [more]
RL15_BACSU2.751e-1345.2850S ribosomal protein L15 OS=Bacillus subtilis GN=... [more]
RL15_SYNS33.593e-1343.9350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNJB3.593e-1344.3450S ribosomal protein L15 OS=Synechococcus sp. GN=... [more]
RL15_CORU73.593e-1344.2350S ribosomal protein L15 OS=Corynebacterium ureal... [more]
RL15_ANOFW3.593e-1344.3450S ribosomal protein L15 OS=Anoxybacillus flavith... [more]
RL15_PROMM4.693e-1341.0750S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_BACLD4.693e-1344.3450S ribosomal protein L15 OS=Bacillus licheniformi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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