CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROMT (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL2A) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G+L  KL  +A AF+ SAK K+E  G
Sbjct:   53 EGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGKLEVKLTVQAAAFTASAKNKIEEVG 143          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROM1 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL1A) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G L  KL  +A AF+ SAK+K+E  G
Sbjct:   53 EGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGNLEVKLTVQAAAFTASAKKKIEEVG 143          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LISMO (50S ribosomal protein L15 OS=Listeria monocytogenes GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G + KKL  KA  FS +AKE +EAAG
Sbjct:   51 EGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LISMH (50S ribosomal protein L15 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G + KKL  KA  FS +AKE +EAAG
Sbjct:   51 EGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LISMF (50S ribosomal protein L15 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G + KKL  KA  FS +AKE +EAAG
Sbjct:   51 EGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LISMC (50S ribosomal protein L15 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G + KKL  KA  FS +AKE +EAAG
Sbjct:   51 EGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LEUCK (50S ribosomal protein L15 OS=Leuconostoc citreum (strain KM20) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRRIPK     G  +    ++  VNL+ +    F +G EV+   L + G++    + +K  +K+L  G+L KKL  KA  FS +AK  +E AG T  VL
Sbjct:   49 EGGQMPLYRRIPK----RGFTNISRKEFAVVNLEKLNT--FADGTEVTPALLIENGIV----KNQKSGIKVLAVGQLEKKLTVKAHKFSGAAKAAIEQAGGTTEVL 144          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACSS (50S ribosomal protein L15 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+RR+PK     G  +    +Y  VNL D+    F +G E++   L + G++    +     +K+L +GEL+KKLN K   +S +AK  +EAAG ++ V+
Sbjct:   49 EGGQMPLFRRMPK----RGFKNINRKEYAVVNLNDLNR--FEDGTEITATVLIEAGVV----KNELSGVKVLANGELNKKLNIKVSKYSEAAKAAVEAAGGSIEVI 144          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_BACHD (50S ribosomal protein L15 OS=Bacillus halodurans GN=rplO PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PLYRR+PK     G  +    ++  VNL+ +    F +G EVS E L + G+++ +    K  +KILG+G+L KKL  KA  FS SA E +EAAG
Sbjct:   51 EGGQNPLYRRLPK----RGFTNPTRKEFAVVNLEKLNR--FEDGTEVSPELLLETGVVSNA----KDGIKILGNGKLEKKLTVKANKFSASAVEAIEAAG 140          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_PROMT9.785e-1141.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM19.785e-1141.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_LISMO9.785e-1143.0050S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LISMH9.785e-1143.0050S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LISMF9.785e-1143.0050S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LISMC9.785e-1143.0050S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LEUCK9.785e-1140.5750S ribosomal protein L15 OS=Leuconostoc citreum (... [more]
RL15_LACSS9.785e-1137.7450S ribosomal protein L15 OS=Lactobacillus sakei s... [more]
RL15_BACHD9.785e-1144.0050S ribosomal protein L15 OS=Bacillus halodurans G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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