CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNPW (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH7803) GN=rplO PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  351 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCT 656
            EGGQMPLYRR+PKL+      H  L       + ++ A   L+ G  VSL++L K G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T
Sbjct:   53 EGGQMPLYRRVPKLK------HFPLVNPKQFTVVNVSALNDLKAGSTVSLDSLVKDGIVTSP----KHPLKILGNGELKTKLTVQAAAFTASARTKIEAAGGT 145          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROM2 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplO PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K PLKILG+G+++ KL  +A AF+  AK+K+EAAG
Sbjct:   53 EGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLIF----KPKFPLKILGNGKINVKLKVQAHAFTKVAKQKIEAAG 143          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_EUBR3 (50S ribosomal protein L15 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplO PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PK     G  +      VP+NL  +E   F     VS+ETL + G++    +  +  +KILG+GEL+KKL  +A AFS SAKEK+EA G
Sbjct:   51 EGGQMPLYRRLPK----RGFKNRNTLTIVPINLSALER--FDNDAVVSVETLIEAGIV----KNPRDGVKILGNGELTKKLTVQANAFSASAKEKIEALG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L ++G+I  +      PLK+LGDG L+K L  KA AFS SA+EK+ A G +  VL
Sbjct:   51 EGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLESLE--PNTEVTLESLMEQGIITTNDG----PLKVLGDGTLTKALTVKAAAFSKSAQEKIAATGGSWEVL 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROM0 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+            +  +NL+ +    F + D V+L++L KKGLI     + K PLKILG+G+L+ KL  +A AF+  AK+K+E AG
Sbjct:   53 EGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNLDSLVKKGLIF----KPKFPLKILGNGKLNVKLKVQAHAFTKVAKQKIEDAG 143          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CORGL (50S ribosomal protein L15 OS=Corynebacterium glutamicum GN=rplO PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = -1
Query:  342 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 656
            EGGQMPL  R+PKL+G     +     Y  VN+ D+ A  F +G +VS+  +   GL+    R+ +L +K+LG+G++S KLN  A  FS SAKEK+EAAG + TV
Sbjct:   52 EGGQMPLQMRLPKLKGFK---NPNKVDYQVVNIADL-AEKFPQGGDVSIADIVAAGLV----RKNEL-VKVLGNGDISVKLNVTANKFSGSAKEKIEAAGGSATV 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CORGB (50S ribosomal protein L15 OS=Corynebacterium glutamicum (strain R) GN=rplO PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = -1
Query:  342 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 656
            EGGQMPL  R+PKL+G     +     Y  VN+ D+ A  F +G +VS+  +   GL+    R+ +L +K+LG+G++S KLN  A  FS SAKEK+EAAG + TV
Sbjct:   52 EGGQMPLQMRLPKLKGFK---NPNKVDYQVVNIADL-AEKFPQGGDVSIADIVAAGLV----RKNEL-VKVLGNGDISVKLNVTANKFSGSAKEKIEAAGGSATV 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K PLKILG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:   51 EGGQQPLYRRIPKLKGFPV---VNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CLOPH (50S ribosomal protein L15 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplO PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI-NPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PK     G  +    + + VN+  +    F +G +V+LE+L++ G+I NP     K  +KILG+GEL+KKLN K  AFS SA EK++A G    V+
Sbjct:   51 EGGQMPLYRRLPK----RGFKNRNTKEIISVNVSMLNR--FEDGADVTLESLREIGIISNP-----KDGVKILGNGELTKKLNVKVSAFSESAIEKIKALGGNAEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_BACA2 (50S ribosomal protein L15 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplO PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL++R+PK     G  +     Y  VN+  +   GF EG EV+ E L + G+I+    +    +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   51 EGGQMPLFQRLPK----RGFTNINRKDYAIVNVDKLN--GFAEGTEVTPELLLETGVIS----KLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI 146          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_SYNPW6.129e-1345.6350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM26.129e-1344.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_EUBR36.129e-1347.0050S ribosomal protein L15 OS=Eubacterium rectale (... [more]
RL15_CYAP86.129e-1346.7950S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_PROM01.045e-1245.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_CORGL1.045e-1244.7650S ribosomal protein L15 OS=Corynebacterium gluta... [more]
RL15_CORGB1.045e-1244.7650S ribosomal protein L15 OS=Corynebacterium gluta... [more]
RL15_ANASP1.045e-1243.4050S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_CLOPH1.365e-1244.8650S ribosomal protein L15 OS=Clostridium phytoferm... [more]
RL15_BACA21.365e-1244.3450S ribosomal protein L15 OS=Bacillus amyloliquefa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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