CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 48/105 (45.71%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  342 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 656
            EGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL   GLI  +      PLKILG+GEL+  L  KA AF+  A+EK+EAAG +  V
Sbjct:   51 EGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLITTNDG----PLKILGNGELTIPLTIKAAAFTKGAQEKIEAAGGSCVV 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CORK4 (50S ribosomal protein L15 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  345 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 656
            EGGQMP++ R+PKL+G     +     Y  VN+ D++   F  G  V++  L   GL+       K P+K+LGDGE++  +N  A  FS SAK+K+EAAG ++T
Sbjct:   52 EGGQMPIHMRLPKLKGFK---NPNKVTYQVVNVADLQKH-FENGGNVTIADLVSAGLVRA-----KQPVKVLGDGEITASVNITATKFSASAKQKIEAAGGSVT 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++  +      PLKILGDGE+   L  +A A + SA+ K+EAAG
Sbjct:   51 EGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTNDG----PLKILGDGEVGVPLTIRAAAITPSARAKVEAAG 142          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROMP (50S ribosomal protein L15 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+            +  VNL  +    F E + V++++L KKK L  P     K PLKILG+GE+  KL  +A AF+  AKEK+EAAG +  ++
Sbjct:   53 EGGQMPLYRRVPKLKHFE---IINQKNFSIVNLSKLSE--FKESEVVNIDSLVKKKLLFKP-----KFPLKILGNGEVKVKLKVQAHAFTKVAKEKIEAAGGSCEII 149          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_BACP2 (50S ribosomal protein L15 OS=Bacillus pumilus (strain SAFR-032) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL++R+PK     G  +     Y  +NL  + +  F EG EV+ E L + G I+    + K  +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   51 EGGQMPLFQRLPK----RGFTNINRKDYAVINLDRLNS--FDEGTEVTPELLLETGAIS----KLKAGVKILGNGKLEKKLTVKANKFSASAKEAIEAAGGTAEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_ANAVT (50S ribosomal protein L15 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++       K PLK+LG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:   51 EGGQQPLYRRIPKLKGFPV---VNRKIYTTINVEKL--ADLPANTEVTLESLRASGILTAV----KGPLKVLGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SULSY (50S ribosomal protein L15 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ P   RIPK     G  +    +Y  VNLK +E   F E +EV+ +TLK+KGL+     ++   +KILGDG+L+KKL  KA AFS SA+EK+++ G
Sbjct:   52 EGGQTPFIMRIPK----RGFKNPSKIEYEIVNLKALENK-FNENEEVNPQTLKEKGLV-----KKGECVKILGDGQLTKKLTVKAHAFSASAEEKIKSVG 141          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROM9 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplO1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+            +  +NL  ++   F + D V+L++L KKGLI     + K PLKILG+G+++ KL  +A AF+  AK+K+E AG +  +L
Sbjct:   53 EGGQMPLYRRVPKLKHFE---IINQKNFSIINLDKLK--DFNDNDTVNLDSLVKKGLIF----KPKFPLKILGNGKVNVKLTVQAHAFTKVAKQKIEDAGGSCELL 149          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACH4 (50S ribosomal protein L15 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+R +PK     G  +    +Y  VNL D+    F +G EV++ETLK+ GL+    ++    +K+LG+GEL  KL  K    S +AK+ +EAAG T+ V+
Sbjct:   51 EGGQMPLFRTMPK----RGFKNINRKEYAIVNLDDLNK--FNDGSEVTVETLKENGLV----KKELSGVKLLGNGELKVKLTVKVNKVSAAAKKAVEAAGGTVEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACBA (50S ribosomal protein L15 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRRIPK     G  +    ++  VNL  +    F +G EV+   L + G++    +  K  +KILG+GELSKKL  KA  FS SA E +EAAG
Sbjct:   49 EGGQMPLYRRIPK----RGFTNINRKEFAVVNLSALNV--FDDGAEVTPAALVEAGIV----KNEKAGIKILGNGELSKKLTVKAAKFSKSAAEAIEAAG 138          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_CYAP71.783e-1245.7150S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_CORK41.783e-1240.3850S ribosomal protein L15 OS=Corynebacterium kropp... [more]
RL15_SYNJA2.329e-1244.0050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROMP2.329e-1243.9350S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_BACP22.329e-1244.3450S ribosomal protein L15 OS=Bacillus pumilus (str... [more]
RL15_ANAVT2.329e-1242.4550S ribosomal protein L15 OS=Anabaena variabilis (... [more]
RL15_SULSY3.042e-1246.0050S ribosomal protein L15 OS=Sulfurihydrogenibium ... [more]
RL15_PROM93.042e-1242.4550S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_LACH43.042e-1241.5150S ribosomal protein L15 OS=Lactobacillus helveti... [more]
RL15_LACBA3.042e-1246.0050S ribosomal protein L15 OS=Lactobacillus brevis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
back to top