CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_HYDS0 (50S ribosomal protein L15 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplO PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+ R+PK+     G  +   K Y  +NL  +E   F +GDE++ ETL  K LI     ++  P+KILG GE++KK   K  A S+SAK+K+EAAG ++ +L
Sbjct:   52 EGGQTPLHMRVPKV-----GFRSPFKKEYSVINLSMLEKH-FNDGDEITKETLLAKSLI-----KKGKPVKILGMGEVTKKFKVKVDAISSSAKQKIEAAGGSVEIL 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_THETN (50S ribosomal protein L15 OS=Thermoanaerobacter tengcongensis GN=rplO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPL RRIPK     G  +    +Y  VN+  +E   F +G E++ E L +KG+I    ++ K  +KILGDGEL+KKL  KA  FS SA EK++A G
Sbjct:   51 EGGQMPLTRRIPK----RGFTNIFKKEYAIVNVGTLEER-FEDGAEITPEVLIEKGII----KDVKDGVKILGDGELTKKLTVKAHKFSQSAVEKIQAVG 141          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_MYCA9 (50S ribosomal protein L15 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMP++ R+PKL+G          +Y  VN+ DIE   F EG +V++E L  KG +    R+ +L +K+LG+G+L  K++  A  FS SA+EK+ AAG
Sbjct:   50 EGGQMPIHMRLPKLKGFKNRFRT---EYQVVNVADIERL-FPEGGDVTIEALVAKGAV----RKNEL-VKVLGNGDLKVKVSVSANKFSDSAREKITAAG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_MYCA5 (50S ribosomal protein L15 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = -1
Query:  348 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTL 656
            EGGQ+PL+RRIPK RG     H    +Y  VNL D+E   +  G+ VS ETL  KGLI     +R LP+KIL  G L+KKL  +    S SAK  +E  G T+
Sbjct:   49 EGGQLPLFRRIPK-RGFNNVNHV---EYQTVNLVDLENK-YSTGEVVSYETLLAKGLI-----KRNLPVKILAKGTLTKKLTIEIPTLSQSAKTAIEKVGGTI 141          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACAC (50S ribosomal protein L15 OS=Lactobacillus acidophilus GN=rplO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+R +PK     G  +    +Y  VNL D+    F +G EV++ TLK+ GL+    ++    +K+LG+GEL  KL  K    S +AKE +EAAG T+ V+
Sbjct:   51 EGGQMPLFRTMPK----RGFKNVNRKEYAIVNLDDLNK--FEDGSEVTVATLKENGLV----KKELSGVKLLGNGELKVKLTVKVNKVSAAAKEAVEAAGGTVEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_FUSNN (50S ribosomal protein L15 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMP+YRR+PK RG +  +     +Y  ++L  +    F +G+EVSLETL  K LI   GR+    +K+LG+GEL+KKL  K    S SAK  +EA G T+ ++
Sbjct:   50 EGGQMPIYRRVPK-RGFSNAIFK--KEYTVISLAFLNE-NFEDGEEVSLETLFNKCLIK-KGRDG---VKVLGNGELNKKLTVKVHKISKSAKAAVEAKGGTVELV 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_ENTFA (50S ribosomal protein L15 OS=Enterococcus faecalis GN=rplO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+RR+PK     G  +     Y  VNL  +    F +G EV+   LK+ G++    +  K  +K+L DGEL+KKL  KA  FS SA+E +EAAG ++ V+
Sbjct:   51 EGGQTPLFRRLPK----RGFTNINRKDYAVVNLDTLNR--FEDGTEVTPVVLKEAGIV----KNEKAGIKVLADGELTKKLTVKAAKFSKSAQEAIEAAGGSIEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNS9 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9902) GN=rplO PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGL--PKYVPV----NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-KKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+      H  L  PK+  V     LKD++     +G  V+L++L K G++       K PLK+LG+GEL+ K L  +A AF+TSA+ K+EAAG T   L
Sbjct:   53 EGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALKDLK-----DGATVNLDSLVKDGIVT----SPKHPLKMLGNGELTVKNLTVQASAFTTSARTKIEAAGGTCETL 150          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACPL (50S ribosomal protein L15 OS=Lactobacillus plantarum GN=rplO PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRRIPK     G  +    +Y  VNL  +    F +G EV+ E+LK+ GL+  S       +K+LG+G+L+KKL  KA  FS +A   +EAAG
Sbjct:   49 EGGQMPLYRRIPK----RGFTNINRKEYAVVNLDGLNR--FDDGAEVTPESLKEAGLVKKSSA-----VKVLGNGKLNKKLTVKASKFSATAVAAIEAAG 137          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNSC (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9605) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLK+LG+GEL +KKL  +A AF++SA  K+EAAG T  +L
Sbjct:   53 EGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNDLKDGSTVNLDSLVKDGIVT----SPKHPLKMLGNGELTAKKLTVQAAAFTSSALTKIEAAGGTCDIL 150          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_HYDS03.042e-1242.9950S ribosomal protein L15 OS=Hydrogenobaculum sp. ... [more]
RL15_THETN3.973e-1247.0050S ribosomal protein L15 OS=Thermoanaerobacter te... [more]
RL15_MYCA93.973e-1243.0050S ribosomal protein L15 OS=Mycobacterium abscess... [more]
RL15_MYCA53.973e-1246.6050S ribosomal protein L15 OS=Mycoplasma arthritidi... [more]
RL15_LACAC3.973e-1241.5150S ribosomal protein L15 OS=Lactobacillus acidoph... [more]
RL15_FUSNN3.973e-1244.3450S ribosomal protein L15 OS=Fusobacterium nucleat... [more]
RL15_ENTFA3.973e-1241.5150S ribosomal protein L15 OS=Enterococcus faecalis... [more]
RL15_SYNS95.189e-1245.1350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_LACPL5.189e-1245.0050S ribosomal protein L15 OS=Lactobacillus plantar... [more]
RL15_SYNSC6.776e-1243.5250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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