CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROMS (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain AS9601) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K PLKILG+G+++ KL  +A +F+  AK+K+E AG
Sbjct:   53 EGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLIF----KPKFPLKILGNGKINVKLKVQAHSFTKVAKQKIEDAG 143          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  360 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAA 656
            EGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++  +      PLK+LGDGE++  L  KA AFS SAKEK+ AA
Sbjct:   51 EGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILTSNDG----PLKVLGDGEITVPLKVKAAAFSNSAKEKITAA 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACGA (50S ribosomal protein L15 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+RR+PK     G  +    +Y  +NL D+    F +G EV+++TLK  GL+    ++    +K+L +GEL  KL  K    S +AK+ +EAAG T+ V+
Sbjct:   51 EGGQMPLFRRMPK----RGFKNVNRKEYAIINLNDLNR--FDDGSEVTIDTLKSSGLV----KKELAGVKLLANGELKVKLTVKVNKVSEAAKKAVEAAGGTVEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PROMA (50S ribosomal protein L15 OS=Prochlorococcus marinus GN=rplO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+      H  L       L ++ +   L EG  V+L++L K G++       K PLK+LG+G L  KL  +A AF+ SAK K+E AG
Sbjct:   54 EGGQMPLYRRVPKLK------HFPLVNSKSFTLINVASLNSLKEGSTVNLDSLVKTGIVTSP----KYPLKVLGNGNLKVKLVVQAAAFTASAKTKIEGAG 144          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_NOSP7 (50S ribosomal protein L15 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PLYRR+PKL+G           Y  +N++ +  A      EV+L +LK  G++       K PLKILG+GELS  L  +A AF+ +A+ K+EAAG +  VL
Sbjct:   51 EGGQQPLYRRLPKLKGFP---IVNQKIYTTINVEKL--ASLPANTEVTLASLKAAGILTAV----KGPLKILGNGELSTPLKVQAAAFTGTARSKIEAAGGSCEVL 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACJO (50S ribosomal protein L15 OS=Lactobacillus johnsonii GN=rplO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+RR+PK     G  +    +Y  +NL D+    F +G EV+++TLK  GL+    ++    +K+L +GEL  KL  K    S +AK+ +EAAG T+ V+
Sbjct:   51 EGGQMPLFRRMPK----RGFKNVNRKEYAIINLNDLNR--FDDGSEVTIDTLKSSGLV----KKELAGVKLLANGELKVKLTVKVNKASEAAKKAVEAAGGTVEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_KOSOT (50S ribosomal protein L15 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PL+RRIP    I G  +    +YV +NL  +E   F EG+ ++ E L +K +I    +  K  +KILG GEL+K L  KA AFS +AKEK+EA G
Sbjct:   52 EGGQTPLFRRIP----IKGFKNRNAKEYVIINLSTLEEV-FEEGNVITPEILLEKKII----KNLKDGVKILGKGELTKALVVKAHAFSRTAKEKIEAVG 142          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_GEOTN (50S ribosomal protein L15 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+ E L +KG+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:   51 EGGQTPLFRRLPK----RGFTNINRKEYAVVNLDRLNI--FEDGTEVTPELLLEKGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CLOTH (50S ribosomal protein L15 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PK     G  +     Y  VN+  + A  F +G  V+ E LK+KG+I    ++    + ILG+GEL KKL  KA  FS +A EK+EAAG  + V+
Sbjct:   51 EGGQMPLYRRVPK----RGFTNIFSKVYTEVNVSALNA--FDDGTVVTQELLKEKGII----KKINDGVVILGNGELKKKLTVKAARFSKTAAEKIEAAGGKVEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_PEDPA (50S ribosomal protein L15 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplO PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRRIPK     G  +    ++  VNL  +    F EG EV+ E+L K G+I+    ++   +K+LG+GE++KKL  KA  FS SA + +EAAG
Sbjct:   49 EGGQMPLYRRIPK----RGFTNINRKEFAIVNLDALNV--FDEGAEVTPESLLKAGIIS----KQLSGVKVLGNGEITKKLTVKANKFSESAVKAIEAAG 138          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_PROMS6.776e-1242.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_MICAN6.776e-1245.4550S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_LACGA6.776e-1239.6250S ribosomal protein L15 OS=Lactobacillus gasseri... [more]
RL15_PROMA8.850e-1243.5650S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_NOSP78.850e-1242.4550S ribosomal protein L15 OS=Nostoc punctiforme (s... [more]
RL15_LACJO8.850e-1239.6250S ribosomal protein L15 OS=Lactobacillus johnson... [more]
RL15_KOSOT8.850e-1246.0050S ribosomal protein L15 OS=Kosmotoga olearia (st... [more]
RL15_GEOTN8.850e-1245.0050S ribosomal protein L15 OS=Geobacillus thermoden... [more]
RL15_CLOTH8.850e-1244.3450S ribosomal protein L15 OS=Clostridium thermocel... [more]
RL15_PEDPA1.156e-1145.0050S ribosomal protein L15 OS=Pediococcus pentosace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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