CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_GLOVI (50S ribosomal protein L15 OS=Gloeobacter violaceus GN=rplO PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  342 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGD-EVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 656
            EGGQ+PLY R+PKL+G           Y  VNLK +     L  D EV++ETL   G++  +      PL++LGDGE    L   A  F+ SA+EK+EAAG T TV
Sbjct:   54 EGGQIPLYMRLPKLKGFE---LVNPSSYTIVNLKQLRD---LPADSEVNIETLLDAGILTATSG----PLRVLGDGEAHVALQITAAYFTASAREKIEAAGGTCTV 149          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_STRS7 (50S ribosomal protein L15 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   51 EGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_STREM (50S ribosomal protein L15 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   51 EGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_STRE4 (50S ribosomal protein L15 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   51 EGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_RHOSR (50S ribosomal protein L15 OS=Rhodococcus sp. (strain RHA1) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+ R+PKL+G          +Y  VN+ DI A  F EG +V++E L  KG +    R+ +L +K+LGDG+L+  +      F+ SAKEK+ AAG T T L
Sbjct:   51 EGGQMPLHMRLPKLKGFTNPFRT---EYQVVNVGDI-ARLFPEGGQVTVEDLVAKGAV----RKNQL-VKVLGDGDLTVAVQVTVDKFTGSAKEKIAAAGGTATEL 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_RHOOB (50S ribosomal protein L15 OS=Rhodococcus opacus (strain B4) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+ R+PKL+G          +Y  VN+ DI A  F EG +V++E L  KG +    R+ +L +K+LGDG+L+  +      F+ SAKEK+ AAG T T L
Sbjct:   50 EGGQMPLHMRLPKLKGFTNPFRT---EYQVVNVGDI-ARLFPEGGQVTVEDLVAKGAV----RKNQL-VKVLGDGDLTVAVQVTVDKFTGSAKEKIAAAGGTATEL 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_NOCSJ (50S ribosomal protein L15 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMP++ R+PKL+G          ++  VNL  I    F EG  V +E L  KG +         P+K+LG GE+S  +   A AFS +A EK+EAAG T T++
Sbjct:   50 EGGQMPIHMRLPKLKGFKNPFKV---EFQVVNLDRINQL-FPEGGAVGVEDLVAKGAVRDGH-----PVKVLGQGEISVAVQVSANAFSATASEKIEAAGGTTTLV 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_MACCJ (50S ribosomal protein L15 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ+PL+RR+PK     G  +     Y  VNL  +    F +G E++  +L + G+++      K  +K+LG+GELSKKL  KA  FS SAKE +E  G T  V+
Sbjct:   51 EGGQLPLFRRLPK----RGFTNINRKDYAIVNLDQLNR--FEDGTEITPASLIETGVVS----NEKSGIKVLGNGELSKKLTVKAHKFSASAKEAIEGKGGTTEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNPX (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH8102) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLKILG+G+L +KKL  +A AF+ SA+ K+EAAG
Sbjct:   54 EGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNSLKDGSTVNLDSLVKDGVVT----SPKHPLKILGNGDLTAKKLTVQAAAFTASARTKIEAAG 145          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_STRAW (50S ribosomal protein L15 OS=Streptomyces avermitilis GN=rplO PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+ R+PKL+G          +Y  VNL  + A  + EG EV++E L  KG +    R+  L +K+LG GE+S  L     A S SAKEK+ AAG T+T L
Sbjct:   54 EGGQMPLHMRLPKLKGFKNPFRT---EYQVVNLDKLTAL-YPEGGEVTVEGLVAKGAV----RKNSL-VKVLGQGEISVALQVTVDAVSGSAKEKITAAGGTVTEL 150          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_GLOVI1.156e-1143.4050S ribosomal protein L15 OS=Gloeobacter violaceus... [more]
RL15_STRS71.510e-1142.4550S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STREM1.510e-1142.4550S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STRE41.510e-1142.4550S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_RHOSR1.510e-1143.4050S ribosomal protein L15 OS=Rhodococcus sp. (stra... [more]
RL15_RHOOB1.510e-1143.4050S ribosomal protein L15 OS=Rhodococcus opacus (s... [more]
RL15_NOCSJ1.510e-1140.5750S ribosomal protein L15 OS=Nocardioides sp. (str... [more]
RL15_MACCJ1.510e-1140.5750S ribosomal protein L15 OS=Macrococcus caseolyti... [more]
RL15_SYNPX1.972e-1144.1250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_STRAW1.972e-1144.3450S ribosomal protein L15 OS=Streptomyces avermiti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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