CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_GEOKA (50S ribosomal protein L15 OS=Geobacillus kaustophilus GN=rplO PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = -1 
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L + G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:   51 EGGQTPLFRRLPK----RGFTNINRKEYAVVNLEKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CLOK5 (50S ribosomal protein L15 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = -1 
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PK     G  +    +Y  +N++ +    F +G E++ E L +K +I    R+ K  LKILG+GEL KKL  KA  F+ +A +K+EAAG  + V+
Sbjct:   51 EGGQMPLYRRVPK----RGFTNIFAKQYSELNVERLNI--FEDGTEITPELLIEKRMI----RKSKDGLKILGNGELQKKLTVKAVKFTKAAAQKIEAAGGKVEVI 146
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CLOK1 (50S ribosomal protein L15 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = -1 
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PK     G  +    +Y  +N++ +    F +G E++ E L +K +I    R+ K  LKILG+GEL KKL  KA  F+ +A +K+EAAG  + V+
Sbjct:   51 EGGQMPLYRRVPK----RGFTNIFAKQYSELNVERLNI--FEDGTEITPELLIEKRMI----RKSKDGLKILGNGELQKKLTVKAVKFTKAAAQKIEAAGGKVEVI 146
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_BACST (50S ribosomal protein L15 OS=Bacillus stearothermophilus GN=rplO PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = -1 
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L + G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:   51 EGGQTPLFRRLPK----RGFTNINRKEYAVVNLEKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LISW6 (50S ribosomal protein L15 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplO PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = -1 
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:   51 EGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIESGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LISIN (50S ribosomal protein L15 OS=Listeria innocua GN=rplO PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = -1 
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:   51 EGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIETGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACDB (50S ribosomal protein L15 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplO PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = -1 
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+R +PK     G  +    +Y  VNL D+    F EG  V  E LK KGL+    +++   +K+LG+G+L+ KL  K    S +AK  +EAAG T+ V+
Sbjct:   51 EGGQMPLFRTMPK----RGFKNINRKEYAIVNLADLNK--FEEGSVVDFEALKAKGLV----KKQLSGVKVLGNGDLNVKLTVKVNKVSEAAKSAIEAAGGTVEVI 146
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACDA (50S ribosomal protein L15 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplO PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = -1 
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+R +PK     G  +    +Y  VNL D+    F EG  V  E LK KGL+    +++   +K+LG+G+L+ KL  K    S +AK  +EAAG T+ V+
Sbjct:   51 EGGQMPLFRTMPK----RGFKNINRKEYAIVNLADLNK--FEEGSVVDFEALKAKGLV----KKQLSGVKVLGNGDLNVKLTVKVNKVSEAAKSAIEAAGGTVEVI 146
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_HALOH (50S ribosomal protein L15 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplO PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = -1 
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQ PL+R++PK     G  +     Y  VN+  +    F +G+EV+ E L +KG+I+   R     +KILG+GEL K L  KA AF+ SA+EK+EAAG
Sbjct:   51 EGGQTPLFRKLPK----KGFNNIFKKVYNEVNVYQLNK--FNKGEEVTPEKLLEKGIIDKVARSG---VKILGNGELDKALTVKAHAFTKSAREKIEAAG 141
[Close]
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_STRT2 (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplO PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = -1 
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+   LK+ G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   51 EGGQTPLFRRLPK----RGFTNINAKEYTLVNLEQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_GEOKA1.972e-1144.0050S ribosomal protein L15 OS=Geobacillus kaustophi... [more]
RL15_CLOK51.972e-1142.4550S ribosomal protein L15 OS=Clostridium kluyveri ... [more]
RL15_CLOK11.972e-1142.4550S ribosomal protein L15 OS=Clostridium kluyveri ... [more]
RL15_BACST1.972e-1144.0050S ribosomal protein L15 OS=Bacillus stearothermo... [more]
RL15_LISW62.575e-1144.0050S ribosomal protein L15 OS=Listeria welshimeri s... [more]
RL15_LISIN3.363e-1144.0050S ribosomal protein L15 OS=Listeria innocua GN=r... [more]
RL15_LACDB3.363e-1140.5750S ribosomal protein L15 OS=Lactobacillus delbrue... [more]
RL15_LACDA3.363e-1140.5750S ribosomal protein L15 OS=Lactobacillus delbrue... [more]
RL15_HALOH3.363e-1144.0050S ribosomal protein L15 OS=Halothermothrix oreni... [more]
RL15_STRT24.392e-1140.5750S ribosomal protein L15 OS=Streptococcus thermop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
back to top