CV885143

Overview
NameCV885143
Unique NameCV885143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNR3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain RCC307) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+           ++  VN+ ++  A    G  V+ ++L + G++       K  LK+LGDGEL  KL   A AF+ SA+EK+EAAG
Sbjct:   53 EGGQMPLYRRVPKLKHFT---LVNPKRFTVVNVGEL--AELKAGTVVTRDSLTEAGILTSP----KHALKVLGDGELKVKLTVHAAAFTASAREKIEAAG 143          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_SYNP2 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 44/100 (44.00%), Postives = 54/100 (54.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PKL+                 L D+ A       EV+LE+L   G++  +      PLK+LGDGELS  L   A AFS  AK K+EAAG
Sbjct:   51 EGGQMPLYRRVPKLKHFTIVNPKNFTIVNVGQLTDLPA-----NTEVTLESLMAAGIVTTNDG----PLKVLGDGELSVALKVTAAAFSNGAKAKIEAAG 141          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_RHOE4 (50S ribosomal protein L15 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPL+ R+PKL+G          +Y  VN+ DI A  F EG  +++E L  KG +    R+ +L +K+LGDGEL+  +      F+ SAKEK+ AAG + T L
Sbjct:   51 EGGQMPLHMRLPKLKGFTNPFRT---EYQVVNVGDI-ARLFPEGGAITVEDLVAKGAV----RKNQL-VKVLGDGELTVAVQVTVDKFTGSAKEKIAAAGGSATEL 147          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_MYCUA (50S ribosomal protein L15 OS=Mycobacterium ulcerans (strain Agy99) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMP++ R+PKL+G          +Y  VN+ DI A  F EG  V ++ L  KG +    R+  L +K+LGDG+L+ K++  A  FS SA+E++ AAG ++T L
Sbjct:   50 EGGQMPIHMRLPKLKGFRNRFRT---EYEIVNVGDI-ARLFPEGGTVGVDELVAKGAV----RKNSL-VKVLGDGKLTVKVDITAHKFSGSAREQITAAGGSVTEL 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LYSSC (50S ribosomal protein L15 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + GL++      K  +K+LG+G L+KKL  KA  FS SAKE +E AG T  V+
Sbjct:   51 EGGQNPLFRRLPK----RGFTNINRKEYAIVNLDALNR--FEDGAEVTTALLLETGLVS----NEKAGIKVLGNGTLNKKLTVKAHKFSASAKEAIENAGGTTEVI 146          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACRJ (50S ribosomal protein L15 OS=Lactobacillus reuteri (strain JCM 1112) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYR+IPK     G  +    +Y  VNL  +    F +G EV+ + L + GL+    +  K  +K+LG G+L KKL  KA  FS SA   +EAAG
Sbjct:   49 EGGQMPLYRQIPK----RGFTNINRKEYAIVNLASLNK--FDDGTEVTPQLLMESGLV----KNLKSGIKVLGSGKLEKKLTVKANKFSASAVSAIEAAG 138          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_LACRD (50S ribosomal protein L15 OS=Lactobacillus reuteri (strain DSM 20016) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYR+IPK     G  +    +Y  VNL  +    F +G EV+ + L + GL+    +  K  +K+LG G+L KKL  KA  FS SA   +EAAG
Sbjct:   49 EGGQMPLYRQIPK----RGFTNINRKEYAIVNLASLNK--FDDGTEVTPQLLMESGLV----KNLKSGIKVLGSGKLEKKLTVKANKFSASAVSAIEAAG 138          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_ELUMP (50S ribosomal protein L15 OS=Elusimicrobium minutum (strain Pei191) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PK  G +    A    YV  N+  +E A    G+EV+ ET+K  GL+  + R     +K+L +GEL K L   A  FS +AK  +E AG ++TV+
Sbjct:   52 EGGQMPLYRRVPK-SGFSNATFAKRFDYV--NIGSLEKA-CKAGEEVTPETMKTLGLVKCAKR-----VKVLANGELKKGLKVSAHGFSATAKAAIEKAGGSVTVI 148          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CLONN (50S ribosomal protein L15 OS=Clostridium novyi (strain NT) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  357 EGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 656
            EGGQMPLYRR+PK     G  +    +YV VN+  +    F +G EV+ E LK  G+I+    + K  +KILG+G L KKL  KA  F+  A EK+E+ G
Sbjct:   51 EGGQMPLYRRLPK----RGFTNIFAKEYVEVNVSRLNI--FEDGTEVTPEVLKANGVIS----KVKDGVKILGNGTLEKKLTIKATKFTKGAVEKIESIG 140          
BLAST of CV885143 vs. ExPASy Swiss-Prot
Match: RL15_CARHZ (50S ribosomal protein L15 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 48/107 (44.86%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  339 EGGQMPLYRRIPKLRGIAGGMHAGLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 656
            EGGQMPLYRR+PK      G H    K  + +N+  +    F +G  V+ E L + G+I   G      +KILG GEL K L  KA AFS SAKEK+ AAG    VL
Sbjct:   51 EGGQMPLYRRLPKR-----GFHNKFAKEIIAINVDRLNK--FEDGTVVTPELLLETGIIKKIGDG----VKILGGGELKKALTVKAHAFSESAKEKITAAGGQAEVL 146          
The following BLAST results are available for this feature:
BLAST of CV885143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RL15_SYNR35.737e-1142.0050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNP25.737e-1144.0050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_RHOE45.737e-1142.4550S ribosomal protein L15 OS=Rhodococcus erythropo... [more]
RL15_MYCUA5.737e-1141.5150S ribosomal protein L15 OS=Mycobacterium ulceran... [more]
RL15_LYSSC5.737e-1141.5150S ribosomal protein L15 OS=Lysinibacillus sphaer... [more]
RL15_LACRJ5.737e-1143.0050S ribosomal protein L15 OS=Lactobacillus reuteri... [more]
RL15_LACRD5.737e-1143.0050S ribosomal protein L15 OS=Lactobacillus reuteri... [more]
RL15_ELUMP5.737e-1142.4550S ribosomal protein L15 OS=Elusimicrobium minutu... [more]
RL15_CLONN5.737e-1144.0050S ribosomal protein L15 OS=Clostridium novyi (st... [more]
RL15_CARHZ5.737e-1144.8650S ribosomal protein L15 OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885143 ID=CV885143; Name=CV885143; organism=Citrus sinensis; type=EST; length=656bp
CTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAG
TTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCA
GAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCT
AAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTAC
AGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAG
CTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTC
TTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAG
GGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCAC
GAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTT
AAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTT
CAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTA
TGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCT
CCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACC
ACCTTC
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