CV885139

Overview
NameCV885139
Unique NameCV885139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:45..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.097e-52
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 3
Query:   72 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 518
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.097e-52
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 3
Query:   72 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 518
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.097e-52
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 3
Query:   72 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 518
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.192e-52
Identity = 93/149 (62.42%), Postives = 120/149 (80.54%), Query Frame = 3
Query:   72 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 518
            V  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++ ++ +++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH             SKK+
Sbjct:    4 VIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.902e-50
Identity = 92/149 (61.74%), Postives = 116/149 (77.85%), Query Frame = 3
Query:   72 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 518
            V  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAGE +  E+D ++ +++NP Q+K+P+WFLNRQKD  DGKY Q+ S+ LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH             SKK+
Sbjct:    4 VIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.303e-49
Identity = 93/149 (62.42%), Postives = 114/149 (76.51%), Query Frame = 3
Query:   72 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 518
            V  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+  EL+ ++ ++ NP QFKIP WFLNRQKD  DGK  Q+++N +D KLR+DLERLKKI+ HRGLRH   LRVRGQH             SKK+
Sbjct:    4 VVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.887e-47
Identity = 83/127 (65.35%), Postives = 108/127 (85.04%), Query Frame = 3
Query:   84 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 464
            +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS  E++ L  ++ +PRQ+ IP WFLNRQKD KDGKYS  ++N +D+K R+DLERLKKIR HRG+RH++GLRVRGQ
Sbjct:   10 EFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQ 136          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 184.496 bits (467), Expect = 4.464e-46
Identity = 84/127 (66.14%), Postives = 106/127 (83.46%), Query Frame = 3
Query:   87 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 467
            FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+  EL+ ++ ++ NP  +KIP WFLNRQ D  DGK    ++N ++ KLRDDLERLKKIR HRG+RH+WGLRVRGQH
Sbjct:   11 FQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.293e-42
Identity = 76/131 (58.02%), Postives = 107/131 (81.68%), Query Frame = 3
Query:   75 ANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 467
            +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE++ ++ ++     +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E LKK+R HRGLRHYWGLRVRGQ+
Sbjct:    6 SESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136          
BLAST of CV885139 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.721e-27
Identity = 55/131 (41.98%), Postives = 87/131 (66.41%), Query Frame = 3
Query:   72 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 464
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G +    +  +  V+ NP++F IP+WFLNR+ DY+ G+   ++ + L+M LRDDL R+K IR+++G RH  GL VRGQ
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQ 131          
The following BLAST results are available for this feature:
BLAST of CV885139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_CAPHI1.097e-5264.4340S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]
RS18_CANFA1.097e-5264.4340S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN1.097e-5264.4340S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_SPOFR3.192e-5262.4240S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME3.902e-5061.7440S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SCHPO3.303e-4962.4240S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_DICDI6.887e-4765.3540S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST4.464e-4666.1440S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI2.293e-4258.0240S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST2.721e-2741.9830S ribosomal protein S13P OS=Methanosphaera stadt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885139 ID=CV885139; Name=CV885139; organism=Citrus sinensis; type=EST; length=681bp
TGCAGCTTCATTTGTAGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCC
TCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTT
GCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCTC
TTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAG
AAAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTGCTGCTGA
ACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCC
CTGATTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAAGTATTCT
CAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATTTGGAGCG
TCTGAAGAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTC
GTGTCCGTGGACAACACACCAAGACCACCGGTCGTCGTGGAAAGACTGTT
GGTGTCTCCAAGAAGCGTTGAGCTGTCCGTTATCAATGTTTTGAACAATC
TATACACATGTTCAGGAAGAGTTTGGACTTGCTATTGCTGAACATTTGCA
TCAGACAATATTAGATTTATTTTCTTTTCTTTGGATGGGTTTTAAGCATT
TGAACTGTCTGTCTTTTATCTATTATAAAAA
back to top