CV885138

Overview
NameCV885138
Unique NameCV885138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9039 contig Csv1_Contig9039:141..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS7_ORYSJ (Homeobox protein knotted-1-like 7 OS=Oryza sativa subsp. japonica GN=OSH3 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.939e-55
Identity = 114/233 (48.93%), Postives = 154/233 (66.09%), Query Frame = -3
Query:  215 LAAARQEFESRQRSSL--NSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPE---------IDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQN---AASLYMD 871
            +AAA +  E+RQR++   +      +DPELDQFME Y  +LV+ +EEL+RP+QEA +F+R +E++LN +++GP     +   +   G+ SS++D+   G   E+ E         IDPR++D+ LK HLLRKYSGY                  KEARQKLL WWELHY+WP PSE EK+ALAESTGL+QKQINN FINQRKRHWKP+E+M+F VM+  H Q+   AA+ Y+D
Sbjct:  106 IAAAARVREARQRAAAAASRMPPAPEDPELDQFMEDYCKLLVECKEELSRPLQEAEEFLRTVESELNSINSGPP--LTALISESKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHWKPTEEMEFAVMEAYHHQSTDAAAAFYVD 336          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.117e-54
Identity = 109/204 (53.43%), Postives = 133/204 (65.20%), Query Frame = -3
Query:  236 SSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPE-----IDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQN 832
            +S+       +DP LDQFMEAY +MLVKY +EL++P +EAM F++R+E Q   LS      F+        G G +  D+ N+G   E  +     +DP+AEDRELK  LLRKYSGY                  KEARQ+LL+WW  HYKWPYPSE +K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+VMD  HP +
Sbjct:  166 ASMGPTGCLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFS--------GYGETAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHH 361          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.613e-53
Identity = 107/202 (52.97%), Postives = 130/202 (64.36%), Query Frame = -3
Query:  242 SSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPE-----IDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHP 832
            +S+    S  +DP LDQFMEAY +MLVKY +EL++P +EAM F++ +E Q   LS                G G +  ++ N+G   E  +     +DP+AEDRELK  LLRKYSGY                  KEARQ+LL+WW  HYKWPYPSE +K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+VMD  HP
Sbjct:  168 ASMGPTGSLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQHVECQFKSLS---------LSSPSSLGYGEAAIERNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHP 360          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.751e-53
Identity = 109/212 (51.42%), Postives = 134/212 (63.21%), Query Frame = -3
Query:  197 SSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMAD 832
            SS +      +DP LDQFMEAY +ML KY +EL++P +EAM F+ RIE Q   L+  P     S   +  +  GSS+E+ + +        IDP+AEDRELK  LLRKYSGY                  KEARQ+L++WW  H KWPYPSE++K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+VMD  HP       +  H+  D
Sbjct:  143 SSSSGGGIIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESALGEAMDRNGSSDEEVDVNNSF-----IDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLANHFPMD 349          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.583e-53
Identity = 113/199 (56.78%), Postives = 133/199 (66.83%), Query Frame = -3
Query:  215 KDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGV---GSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMD 802
            +DP LDQFMEAY +ML KY +EL++P++EAM F++RIE Q   L+       +S+D    EG    GSSEED +          IDP+AEDR+LK  LLRKYSGY                  KEARQ+LL WW  HYKWPYPSE++K+ALAESTGLDQKQINNWFINQRKRHWKPSEDMQF+VMD  HP      YMD
Sbjct:  181 EDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLT------ISSSDFASNEGGDRNGSSEEDVDLHN------MIDPQAEDRDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPH----YYMD 363          

HSP 2 Score: 21.557 bits (44), Expect = 3.583e-53
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = -1
Query:  880 CQKVEVPPEV 909
            CQKV  PPEV
Sbjct:  144 CQKVGAPPEV 153          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS4_ORYSJ (Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.946e-53
Identity = 116/220 (52.73%), Postives = 136/220 (61.82%), Query Frame = -3
Query:  227 RLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETE---LPEI-DPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAAS 874
            RL+A   E +SR         S+  DPELD+FME Y DMLV YR+ELTRPIQEA  F R +E Q++  +          DD   EG  SSE++QE  GG+     LPEI  P AED+ELK+HLL KYSGY                  ++ARQKLL+WW+LHY+WPYPSE EK ALAESTGLD KQINNWFINQRKRHWKP+     M    L P  AAS
Sbjct:   94 RLSALAGELDSRAEDRYLQGQSS--DPELDEFMETYIDMLVSYRQELTRPIQEADQFFRNMEAQIDSFT---------LDDNGSEGGNSSEDEQEAGGGDMASAGLPEITSPCAEDKELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHWKPTPPA--MEYRSLQPAGAAS 300          

HSP 2 Score: 21.557 bits (44), Expect = 7.946e-53
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = -1
Query:  880 CQKVEVPPEV 909
            CQKV  PPEV
Sbjct:   82 CQKVGAPPEV 91          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS8_ORYSJ (Homeobox protein knotted-1-like 8 OS=Oryza sativa subsp. japonica GN=OSH43 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.256e-47
Identity = 112/245 (45.71%), Postives = 136/245 (55.51%), Query Frame = -3
Query:  179 AARQEFESRQRSSLNSRDSTNKDPE-LDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-------------GLHPQNAASLYMDGHYMADGPYRLG 865
            AA+Q  E+            + DP+ LDQFM+AY  ML +YREEL RPI EA +F  R+ETQL+ L+           +  CEG GSSEE+Q+ S              D++LK+ LLRKY G                   KEARQKLL+WWELHYKWPYPSE EK+ LA++TGLDQKQINNWFINQRKRHWKP+      F  M+             GL    A  LYM   ++ DG YRLG
Sbjct:  121 AAQQLDEADGHPRRRHEPQRDDDPDQLDQFMDAYCSMLTRYREELERPILEAAEFFSRVETQLDSLA-----------ESNCEGTGSSEEEQDPS--------------DKQLKHQLLRKYGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTPVAGTAFPTMEAAGGGFRHSGHGGGLAAAAALPLYMGRPFVVDGMYRLG 340          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.556e-46
Identity = 97/183 (53.01%), Postives = 120/183 (65.57%), Query Frame = -3
Query:  254 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEID-PRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMD 799
            DPELD+FME Y D+LVKY+ +L RP  EA  F+ +IE QL  L  G       ++D    GV SS  D+E SGG+ E+ E    R EDR+LK+ LLRK+                     +EARQ LL+WW LHYKWPYP+E +K+ALA++TGLDQKQINNWFINQRKRHWKPSE+M F +MD
Sbjct:  141 DPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNLCTGVESARGVSED----GVISS--DEELSGGDHEVAEDGRQRCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHWKPSENMPFAMMD 317          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS1_ORYSJ (Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.143e-45
Identity = 97/200 (48.50%), Postives = 124/200 (62.00%), Query Frame = -3
Query:  215 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEI----DPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGL-HPQNAASLYMD 799
            DPELD+FMEAY  +LV+Y+EEL+RP  EA  F+  I+TQL+ L +G      +T     E VGSS+EDQ    GET++ +I      R  D ELK  LL+KYSG                   K+AR  LL WW  HY+WPYP+E +K+ LA  TGLD KQINNWFINQRKRHWKPS+ M+F +M+G+    +  +LY D
Sbjct:   98 DPELDEFMEAYCRVLVRYKEELSRPFDEAASFLSSIQTQLSNLCSGATSPPATTATHSDEMVGSSDEDQ--CSGETDMLDIGQEQSSRLADHELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFINQRKRHWKPSDGMRFALMEGVAGGSSGTTLYFD 295          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAT2_ARATH (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 2.334e-44
Identity = 91/182 (50.00%), Postives = 115/182 (63.19%), Query Frame = -3
Query:  254 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMD 799
            DPELD+FME Y D+LVKY+ +L RP  EA  FI +IE QL  L  GP      +DD     V S EE +E+   +    +   R+ DR+LK+ LLRK+  +                  +EARQ LL+WW +H KWPYP+E +K++LAE TGLDQKQINNWFINQRKRHWKPSE+M F +MD
Sbjct:  125 DPELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASATALSDDG---AVSSDEELREDD--DIAADDSQQRSNDRDLKDQLLRKFGSHISSLKLEFSKKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHWKPSENMPFDMMD 301          
The following BLAST results are available for this feature:
BLAST of CV885138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
KNOS7_ORYSJ2.939e-5548.93Homeobox protein knotted-1-like 7 OS=Oryza sativa ... [more]
STM_ARATH1.117e-5453.43Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
STM_BRAOL1.613e-5352.97Homeobox protein SHOOT MERISTEMLESS OS=Brassica ol... [more]
LET6_SOLLC2.751e-5351.42Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]
HSBH1_SOYBN3.583e-5356.78Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV... [more]
KNOS4_ORYSJ7.946e-5352.73Homeobox protein knotted-1-like 4 OS=Oryza sativa ... [more]
KNOS8_ORYSJ2.256e-4745.71Homeobox protein knotted-1-like 8 OS=Oryza sativa ... [more]
KNAT6_ARATH5.556e-4653.01Homeobox protein knotted-1-like 6 OS=Arabidopsis t... [more]
KNOS1_ORYSJ6.143e-4548.50Homeobox protein knotted-1-like 1 OS=Oryza sativa ... [more]
KNAT2_ARATH2.334e-4450.00Homeobox protein knotted-1-like 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885138 ID=CV885138; Name=CV885138; organism=Citrus sinensis; type=EST; length=909bp
ATTGATTTCTGAATAATAAGGTCAGTTGTAGGATAATACCAAATTCTCAC
AGCACTTAAAATAGTACATACGTAGCATTAAGACTAACACTTTGATACTT
AACCACTAGCAAACAGCAGCACTATACCGTCCTATTTCTCTCACATAAAA
TTTGTATGTGAGCTGGCCATGATCATGGTCCCAAACGGTATGGACCATCA
GCCATGTAGTGTCCATCCATATAAAGAGAAGCAGCATTCTGAGGATGAAG
GCCATCCATCACCATGAATTGCATATCTTCAGAAGGTTTCCAGTGCCGCT
TCCTTTGGTTGATAAACCAGTTGTTTATCTGTTTCTGATCCAAGCCAGTT
GATTCAGCCAATGCCACCTTCTCTGTCTCCGAAGGATAAGGCCATTTATA
GTGTAATTCCCACCAGTTAAGTAGCTTTTGCCTGGCTTCTTTGGGTAGTT
TCCCTTTCTTCTTTTTCTTGGACAGTTCTTGTTTGAGGCTACTTAAGTAG
CCACTGTATTTCCTCAATAGGTGGTTCTTCAGTTCTCGATCTTCAGCCCG
GGGATCAATTTCAGGTAACTCTGTCTCTCCACCACTATTTTCTTGATCTT
CTTCGGAGGAGCCAACGCCTTCACATTTCTGATCATCAGTGGAGTTGAAG
ATCCGAACGGGGCCATTGCTAAGCATATTAAGCTGAGTTTCGATCCGCCG
GATGAAATCCATGGCTTCTTGTATTGGCCTTGTTAGCTCTTCCCGATATT
TCACTAGCATGTCGTAATAAGCCTCCATAAATTGATCGAGTTCTGGGTCT
TTATTAGTAGAGTCTCTCGAATTCAACGACGATCGCTGCCTTGACTCGAA
CTCCTGTCTAGCAGCTGCAAGCCGAGCCCAACTTCCGGCGGAACTTCGAC
CTTTTGGCA
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