CV885138

Overview
NameCV885138
Unique NameCV885138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9039 contig Csv1_Contig9039:141..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOSA_ORYSJ (Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. japonica GN=OSH71 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.357e-42
Identity = 93/201 (46.27%), Postives = 119/201 (59.20%), Query Frame = -3
Query:  215 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEI----DPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGL--HPQNAASLYMD 799
            DPELD+FME Y  +L +Y+EELTRP  EA  F+  I TQL  L  G     +++D+     VGSSE+  E   G+ +  +       R  D ELK  LL+KYSG                   K+AR  L++WW  HY+WPYP+E +KV LA  TGLD KQINNWFINQRKRHWKPSEDM+F +M+G+     +  +LY D
Sbjct:  111 DPELDEFMETYCRVLERYKEELTRPFDEAASFLTGIHTQLASLCGGAPPPTDNSDEM----VGSSED--EPCSGDADAADFGQEHSSRLADHELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGVTGGSSSGTTLYFD 305          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOSA_ORYSI (Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. indica GN=OSH71 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.357e-42
Identity = 93/201 (46.27%), Postives = 119/201 (59.20%), Query Frame = -3
Query:  215 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEI----DPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGL--HPQNAASLYMD 799
            DPELD+FME Y  +L +Y+EELTRP  EA  F+  I TQL  L  G     +++D+     VGSSE+  E   G+ +  +       R  D ELK  LL+KYSG                   K+AR  L++WW  HY+WPYP+E +KV LA  TGLD KQINNWFINQRKRHWKPSEDM+F +M+G+     +  +LY D
Sbjct:  111 DPELDEFMETYCRVLERYKEELTRPFDEAASFLTGIHTQLASLCGGAPPPTDNSDEM----VGSSED--EPCSGDADAADFGQEHSSRLADHELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGVTGGSSSGTTLYFD 305          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS5_ORYSJ (Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp. japonica GN=Os03g0673500 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.157e-37
Identity = 92/201 (45.77%), Postives = 110/201 (54.73%), Query Frame = -3
Query:  227 DPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDREL----KNHLLRKYSGYXXXXXXXXXXXXXXXXXXK--EARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKP----SEDMQFMVMDGLHPQNAAS 799
            DPELDQFME Y  ML +Y +EL RPIQEA +F R IE Q++ L+               E V    ED+   G    LPE      + E+    + HL+ KYSGY                     +AR KLL WW LHY+WPYPSE EK ALAESTGLD+KQ+ NWFINQRKRHWKP    + D  F+ M   HP+  AS
Sbjct:  130 DPELDQFMETYCYMLTRYGQELARPIQEAEEFFRGIEEQIDSLALD-------------EDVSYDYEDEVAGG----LPEKSAAFGENEVTTTTRRHLMNKYSGYLNSLWTEISNKKKNSTGHLPRDARHKLLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVTNWFINQRKRHWKPKPAAAMDAGFLQM---HPRYGAS 310          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS9_ORYSJ (Homeobox protein knotted-1-like 9 OS=Oryza sativa subsp. japonica GN=Os03g0772100 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.044e-33
Identity = 102/253 (40.32%), Postives = 131/253 (51.78%), Query Frame = -3
Query:  179 AARQEFESR----QRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHY-KWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFMVMD-------------GLHPQNAAS---LYMDG-HYMADGPYRLG 865
            AA+Q+ ++     +R     RD    D +LDQFM A                    D ++      +  S G +++ +S  D  CEG GSSEE+Q+ S  E E  EIDP   D++LK+ LL KY G                   KEAR KLL+WWELHY KWPYPSE EK+ LA++TGLDQKQI+NWFINQRKRHWKP+    M F  ++             GL    AA+   LYM    ++ DG YRLG
Sbjct:  119 AAQQQLDAADGHPRRRHEPRRDDDVPDHQLDQFMHA--------------------DEVQGGAGAADPGSRGVLQL-DSIADSNCEGTGSSEEEQDTSCPEAE--EIDP--SDKQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTPVAGMTFPTVEAAGGGFRHSGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLG 346          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX4_MAIZE (Homeobox protein knotted-1-like 4 (Fragment) OS=Zea mays GN=KNOX4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.243e-29
Identity = 61/85 (71.76%), Postives = 65/85 (76.47%), Query Frame = -3
Query:  281 ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS 535
            ELK  LL+KYSGY                  KEARQKLL+WWELHYKWPYPSETEK+ALAE+TGLDQKQINNWFINQRKRHWKPS
Sbjct:    1 ELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAEATGLDQKQINNWFINQRKRHWKPS 85          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX3_MAIZE (Homeobox protein knotted-1-like 3 (Fragment) OS=Zea mays GN=KNOX3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.618e-29
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  281 EDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS 544
            +D+ELK  LLRKYSG                   KEARQKLL+WWELHY+WPYPSE EK+ALAESTGL+QKQINNWFINQRKRHWKPS
Sbjct:    1 DDKELKKQLLRKYSGCLGNLRKELCKKRKKDKLPKEARQKLLSWWELHYRWPYPSEMEKIALAESTGLEQKQINNWFINQRKRHWKPS 88          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX8_MAIZE (Homeobox protein knotted-1-like 8 (Fragment) OS=Zea mays GN=KNOX8 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.375e-28
Identity = 59/85 (69.41%), Postives = 64/85 (75.29%), Query Frame = -3
Query:  281 ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS 535
            ELK+ LLRKY GY                  KEARQKLL+WWELHYKWPYPSETEK+ALAE+TGLD KQINNWFINQRKRHWKP+
Sbjct:    1 ELKHQLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHWKPA 85          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNX10_MAIZE (Homeobox protein knotted-1-like 10 (Fragment) OS=Zea mays GN=KNOX10 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.423e-27
Identity = 55/86 (63.95%), Postives = 62/86 (72.09%), Query Frame = -3
Query:  287 EDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWK 544
            ED +LKN LL KYSGY                  ++ARQKLL+WW+LHY+WPYPSE EK ALAESTGL+ KQINNWFINQRKRHWK
Sbjct:    1 EDNDLKNRLLNKYSGYLSSLWRELSRKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLEAKQINNWFINQRKRHWK 86          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNX11_MAIZE (Homeobox protein knotted-1-like 11 (Fragment) OS=Zea mays GN=KNOX11 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.966e-23
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = -3
Query:  281 DRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS 541
            DRELK  LL+KYSG                   K+AR  L++WW  HY+WPYP+E +KV LA +TGLD KQINNWFINQRKRHWKPS
Sbjct:    2 DRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAATGLDPKQINNWFINQRKRHWKPS 88          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX5_MAIZE (Homeobox protein knotted-1-like 5 (Fragment) OS=Zea mays GN=KNOX5 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.543e-22
Identity = 48/85 (56.47%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  281 ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS 535
            ELK  LL+KYSG                   K+AR  L++WW  HY+WPYP+E +KV LA  TGLD KQINNWFINQRKRHWKPS
Sbjct:    1 ELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS 85          
The following BLAST results are available for this feature:
BLAST of CV885138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
KNOSA_ORYSJ6.357e-4246.27Homeobox protein knotted-1-like 10 OS=Oryza sativa... [more]
KNOSA_ORYSI6.357e-4246.27Homeobox protein knotted-1-like 10 OS=Oryza sativa... [more]
KNOS5_ORYSJ6.157e-3745.77Putative homeobox protein knotted-1-like 5 OS=Oryz... [more]
KNOS9_ORYSJ7.044e-3340.32Homeobox protein knotted-1-like 9 OS=Oryza sativa ... [more]
KNOX4_MAIZE1.243e-2971.76Homeobox protein knotted-1-like 4 (Fragment) OS=Ze... [more]
KNOX3_MAIZE3.618e-2968.18Homeobox protein knotted-1-like 3 (Fragment) OS=Ze... [more]
KNOX8_MAIZE1.375e-2869.41Homeobox protein knotted-1-like 8 (Fragment) OS=Ze... [more]
KNX10_MAIZE4.423e-2763.95Homeobox protein knotted-1-like 10 (Fragment) OS=Z... [more]
KNX11_MAIZE2.966e-2357.47Homeobox protein knotted-1-like 11 (Fragment) OS=Z... [more]
KNOX5_MAIZE9.543e-2256.47Homeobox protein knotted-1-like 5 (Fragment) OS=Ze... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885138 ID=CV885138; Name=CV885138; organism=Citrus sinensis; type=EST; length=909bp
ATTGATTTCTGAATAATAAGGTCAGTTGTAGGATAATACCAAATTCTCAC
AGCACTTAAAATAGTACATACGTAGCATTAAGACTAACACTTTGATACTT
AACCACTAGCAAACAGCAGCACTATACCGTCCTATTTCTCTCACATAAAA
TTTGTATGTGAGCTGGCCATGATCATGGTCCCAAACGGTATGGACCATCA
GCCATGTAGTGTCCATCCATATAAAGAGAAGCAGCATTCTGAGGATGAAG
GCCATCCATCACCATGAATTGCATATCTTCAGAAGGTTTCCAGTGCCGCT
TCCTTTGGTTGATAAACCAGTTGTTTATCTGTTTCTGATCCAAGCCAGTT
GATTCAGCCAATGCCACCTTCTCTGTCTCCGAAGGATAAGGCCATTTATA
GTGTAATTCCCACCAGTTAAGTAGCTTTTGCCTGGCTTCTTTGGGTAGTT
TCCCTTTCTTCTTTTTCTTGGACAGTTCTTGTTTGAGGCTACTTAAGTAG
CCACTGTATTTCCTCAATAGGTGGTTCTTCAGTTCTCGATCTTCAGCCCG
GGGATCAATTTCAGGTAACTCTGTCTCTCCACCACTATTTTCTTGATCTT
CTTCGGAGGAGCCAACGCCTTCACATTTCTGATCATCAGTGGAGTTGAAG
ATCCGAACGGGGCCATTGCTAAGCATATTAAGCTGAGTTTCGATCCGCCG
GATGAAATCCATGGCTTCTTGTATTGGCCTTGTTAGCTCTTCCCGATATT
TCACTAGCATGTCGTAATAAGCCTCCATAAATTGATCGAGTTCTGGGTCT
TTATTAGTAGAGTCTCTCGAATTCAACGACGATCGCTGCCTTGACTCGAA
CTCCTGTCTAGCAGCTGCAAGCCGAGCCCAACTTCCGGCGGAACTTCGAC
CTTTTGGCA
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