CV885138

Overview
NameCV885138
Unique NameCV885138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9039 contig Csv1_Contig9039:141..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: HLG3_MAIZE (Homeobox protein liguleless 3 (Fragment) OS=Zea mays GN=LG3 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.246e-21
Identity = 49/85 (57.65%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  281 ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPS 535
            ELK  LL+KYSG                   K+AR  LL WW  HY+WPYP+E +KV LA  TGLD KQINNWFINQRKRHWKPS
Sbjct:    1 ELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARTVLLEWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHWKPS 85          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.419e-17
Identity = 60/206 (29.13%), Postives = 88/206 (42.72%), Query Frame = -3
Query:  290 SSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAED---------------------RELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 832
            S+L +  + +   ELDQFM  Y  +L  ++E+L + ++    EA+     +E  L  L          T     EG G++  D E+   ++E    DP  +                      +ELK+ L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  156 SALAAAAAGDDGRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSL----------TGASPGEGTGATMSDGEDDQADSEANMYDPSLDGADNMGFGLPTESERSLMERVRQELKHELKQGYKEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 351          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.419e-17
Identity = 59/187 (31.55%), Postives = 82/187 (43.85%), Query Frame = -3
Query:  290 ELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSN-----GPVRIFNSTDDQKCEGVGSSEEDQENSGGE--TELPEIDPRAEDR--------ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 793
            ELD F+  Y  +L  ++E+L + ++    EA+   R IE  L+ L+      G     +  +D       S     + SGG   T    + P   +R        ELK  L + +                      +    L NWW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:   89 ELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 275          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.419e-17
Identity = 61/194 (31.44%), Postives = 84/194 (43.30%), Query Frame = -3
Query:  290 DPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEID------------PRAEDR--------ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 799
            D ELDQFM  Y  +L  ++E+L + ++    EA+     IE  L  L          T     EG+G++  D E+   E++    D            P   +R        ELK+ L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  220 DKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSL----------TGVSPGEGMGATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 403          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.419e-17
Identity = 59/187 (31.55%), Postives = 82/187 (43.85%), Query Frame = -3
Query:  290 ELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSN-----GPVRIFNSTDDQKCEGVGSSEEDQENSGGE--TELPEIDPRAEDR--------ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 793
            ELD F+  Y  +L  ++E+L + ++    EA+   R IE  L+ L+      G     +  +D       S     + SGG   T    + P   +R        ELK  L + +                      +    L NWW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:   92 ELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLQMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 278          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.243e-17
Identity = 59/187 (31.55%), Postives = 81/187 (43.32%), Query Frame = -3
Query:  290 DPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSN------GPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAED-------RELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 799
            D ELDQFM  Y  +L  ++E+L + ++    EA+     IE  L  L+           + +  DDQ        +E  E        P I   +E        +ELK+ L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  225 DKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 411          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.335e-15
Identity = 57/187 (30.48%), Postives = 77/187 (41.18%), Query Frame = -3
Query:  290 ELDQFMEAYYDMLVKYREELTRPI----QEAMDFIRRIETQLNML-------SNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDR--------ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 793
            ELD FM  Y  +L  ++E+L   +     EA+     IE  L  L       SNG     +  D+Q    V   +   + S        + P   +R        ELK+ L + +                      +    L  WW  H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  176 ELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNW 362          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.335e-15
Identity = 58/194 (29.90%), Postives = 82/194 (42.27%), Query Frame = -3
Query:  290 DPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEID------------PRAEDR--------ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 799
            D ELD FM  Y  +L  ++E+L + ++    EA+     IE  L             T     EG G++  + E+   E++    D            P   +R        ELK+ L + Y                      +    L +WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  184 DKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSF----------TGVSPGEGTGATMSEDEDEQVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 367          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.743e-15
Identity = 57/197 (28.93%), Postives = 84/197 (42.64%), Query Frame = -3
Query:  290 DPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEID---------------PRAEDR--------ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 799
            D +LDQFM  Y  +L  ++E+L + ++    EA+     +E  L  L          T     EG G++  D ++   +++   +D               P   +R        ELK+ L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  222 DKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSL----------TGVAPGEGTGATMSDDDDDQADSDTNFLDGGFDGPDSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 408          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.743e-15
Identity = 60/201 (29.85%), Postives = 85/201 (42.29%), Query Frame = -3
Query:  290 STNKDPELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSS-EEDQENSGGETELP--------------EIDPRAEDR--------ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 811
            S +   ELD F+  Y  +L  +RE+L + ++    EA+   R IE  L  L+   +           EG G++  ED++ +    E P               + P   +R        ELK  L + +                      +    L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  109 SPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLE----------EGTGATMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 299          
The following BLAST results are available for this feature:
BLAST of CV885138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HLG3_MAIZE1.246e-2157.65Homeobox protein liguleless 3 (Fragment) OS=Zea ma... [more]
KNOSD_ORYSJ5.419e-1729.13Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNAT7_ARATH5.419e-1731.55Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
KNAT3_ARATH5.419e-1731.44Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
HD1_BRANA5.419e-1731.55Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]
KNAP3_MALDO9.243e-1731.55Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT5_ARATH1.335e-1530.48Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
KNAT4_ARATH1.335e-1529.90Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
LET12_SOLLC1.743e-1528.93Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
KNOS3_ORYSJ1.743e-1529.85Homeobox protein knotted-1-like 3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885138 ID=CV885138; Name=CV885138; organism=Citrus sinensis; type=EST; length=909bp
ATTGATTTCTGAATAATAAGGTCAGTTGTAGGATAATACCAAATTCTCAC
AGCACTTAAAATAGTACATACGTAGCATTAAGACTAACACTTTGATACTT
AACCACTAGCAAACAGCAGCACTATACCGTCCTATTTCTCTCACATAAAA
TTTGTATGTGAGCTGGCCATGATCATGGTCCCAAACGGTATGGACCATCA
GCCATGTAGTGTCCATCCATATAAAGAGAAGCAGCATTCTGAGGATGAAG
GCCATCCATCACCATGAATTGCATATCTTCAGAAGGTTTCCAGTGCCGCT
TCCTTTGGTTGATAAACCAGTTGTTTATCTGTTTCTGATCCAAGCCAGTT
GATTCAGCCAATGCCACCTTCTCTGTCTCCGAAGGATAAGGCCATTTATA
GTGTAATTCCCACCAGTTAAGTAGCTTTTGCCTGGCTTCTTTGGGTAGTT
TCCCTTTCTTCTTTTTCTTGGACAGTTCTTGTTTGAGGCTACTTAAGTAG
CCACTGTATTTCCTCAATAGGTGGTTCTTCAGTTCTCGATCTTCAGCCCG
GGGATCAATTTCAGGTAACTCTGTCTCTCCACCACTATTTTCTTGATCTT
CTTCGGAGGAGCCAACGCCTTCACATTTCTGATCATCAGTGGAGTTGAAG
ATCCGAACGGGGCCATTGCTAAGCATATTAAGCTGAGTTTCGATCCGCCG
GATGAAATCCATGGCTTCTTGTATTGGCCTTGTTAGCTCTTCCCGATATT
TCACTAGCATGTCGTAATAAGCCTCCATAAATTGATCGAGTTCTGGGTCT
TTATTAGTAGAGTCTCTCGAATTCAACGACGATCGCTGCCTTGACTCGAA
CTCCTGTCTAGCAGCTGCAAGCCGAGCCCAACTTCCGGCGGAACTTCGAC
CTTTTGGCA
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