CV885138

Overview
NameCV885138
Unique NameCV885138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS2_ORYSJ (Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15
Identity = 55/184 (29.89%), Postives = 80/184 (43.48%), Query Frame = -3
Query:  290 ELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSN-----GPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAED-------RELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 793
            ELD FM  Y  +L  ++E+L + ++    EA+     +E  L  L+      G     +  +D + +   +  +  + S G    P +    E         ELKN L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  103 ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMSDDEDNQVDSEANMFDGNDGSDGMGFGPLMLTEGERSLVERVRHELKNELKQGYKEKLVDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNW 286          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 58/184 (31.52%), Postives = 82/184 (44.57%), Query Frame = -3
Query:  290 ELDQFMEAYYDMLVKYREELTRPIQ----EAMDFIRRIETQLNMLSNGPVRIFNS---TDDQKCEGVGSSEEDQENSG------GETELPEIDPRAEDR---ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 793
            ELD FM  Y  +L  ++E+L + ++    EA+     +E  L  L+    R  +    +DD+  +    S     N G      G   L E +    +R   ELK+ L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  112 ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 295          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX7_MAIZE (Homeobox protein knotted-1-like 7 (Fragment) OS=Zea mays GN=KNOX7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 35/82 (42.68%), Postives = 42/82 (51.22%), Query Frame = -3
Query:  290 ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 535
            ELKN L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNW 82          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX6_MAIZE (Homeobox protein knotted-1-like 6 (Fragment) OS=Zea mays GN=KNOX6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 35/82 (42.68%), Postives = 42/82 (51.22%), Query Frame = -3
Query:  290 ELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 535
            ELKN L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNW 82          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX1_MAIZE (Homeobox protein knotted-1-like 1 (Fragment) OS=Zea mays GN=KNOX1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.747e-13
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -3
Query:  290 LLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 424
            L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:   41 LKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 85          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX2_MAIZE (Homeobox protein knotted-1-like 2 (Fragment) OS=Zea mays GN=KNOX2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = -3
Query:  290 RELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHW 538
            +ELK+ L + Y                      +    L  WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:    3 QELKHELKQGYRDKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 85          
The following BLAST results are available for this feature:
BLAST of CV885138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
KNOS2_ORYSJ2.277e-1529.89Homeobox protein knotted-1-like 2 OS=Oryza sativa ... [more]
KNOSB_ORYSJ3.883e-1531.52Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
KNOX7_MAIZE3.635e-1342.68Homeobox protein knotted-1-like 7 (Fragment) OS=Ze... [more]
KNOX6_MAIZE3.635e-1342.68Homeobox protein knotted-1-like 6 (Fragment) OS=Ze... [more]
KNOX1_MAIZE4.747e-1366.67Homeobox protein knotted-1-like 1 (Fragment) OS=Ze... [more]
KNOX2_MAIZE8.097e-1340.96Homeobox protein knotted-1-like 2 (Fragment) OS=Ze... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885138 ID=CV885138; Name=CV885138; organism=Citrus sinensis; type=EST; length=909bp
ATTGATTTCTGAATAATAAGGTCAGTTGTAGGATAATACCAAATTCTCAC
AGCACTTAAAATAGTACATACGTAGCATTAAGACTAACACTTTGATACTT
AACCACTAGCAAACAGCAGCACTATACCGTCCTATTTCTCTCACATAAAA
TTTGTATGTGAGCTGGCCATGATCATGGTCCCAAACGGTATGGACCATCA
GCCATGTAGTGTCCATCCATATAAAGAGAAGCAGCATTCTGAGGATGAAG
GCCATCCATCACCATGAATTGCATATCTTCAGAAGGTTTCCAGTGCCGCT
TCCTTTGGTTGATAAACCAGTTGTTTATCTGTTTCTGATCCAAGCCAGTT
GATTCAGCCAATGCCACCTTCTCTGTCTCCGAAGGATAAGGCCATTTATA
GTGTAATTCCCACCAGTTAAGTAGCTTTTGCCTGGCTTCTTTGGGTAGTT
TCCCTTTCTTCTTTTTCTTGGACAGTTCTTGTTTGAGGCTACTTAAGTAG
CCACTGTATTTCCTCAATAGGTGGTTCTTCAGTTCTCGATCTTCAGCCCG
GGGATCAATTTCAGGTAACTCTGTCTCTCCACCACTATTTTCTTGATCTT
CTTCGGAGGAGCCAACGCCTTCACATTTCTGATCATCAGTGGAGTTGAAG
ATCCGAACGGGGCCATTGCTAAGCATATTAAGCTGAGTTTCGATCCGCCG
GATGAAATCCATGGCTTCTTGTATTGGCCTTGTTAGCTCTTCCCGATATT
TCACTAGCATGTCGTAATAAGCCTCCATAAATTGATCGAGTTCTGGGTCT
TTATTAGTAGAGTCTCTCGAATTCAACGACGATCGCTGCCTTGACTCGAA
CTCCTGTCTAGCAGCTGCAAGCCGAGCCCAACTTCCGGCGGAACTTCGAC
CTTTTGGCA
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