CV885130

Overview
NameCV885130
Unique NameCV885130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885130_ssr294 microsatellite CV885130_ssr294:294..311. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:936..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885130 vs. ExPASy Swiss-Prot
Match: SAHH_HALWD (Adenosylhomocysteinase OS=Haloquadratum walsbyi (strain DSM 16790) GN=achY PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.110e-22
Identity = 70/196 (35.71%), Postives = 106/196 (54.08%), Query Frame = -2
Query:  347 VIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDV-----LGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGC--ATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADG 913
            VIVTE++P  AL+A MEG +V+ + +  +  D+FVTTTGN+D+I  +  + M + AI+ N GHFD EI++     L ++TY     +      D          + VLAEGRL+NL    A GHP+ VM  SF  Q +   EL + KS+  Y+  V+ +P  LD +V           +  LT+ Q++Y+   + G
Sbjct:  245 VIVTEVEPRRALEAHMEGYEVMPMNEAATRGDVFVTTTGNRDVITQEDFEVMSDGAILANAGHFDVEINLEELSELAIDTYEARDGVQAYELGD-------GRRLNVLAEGRLVNLAAPIALGHPAEVMDQSFGIQAVCVRELIENKSS--YDAGVHNVPDELDREVAEIKLKAEGVDIDSLTQTQSEYLDSWSHG 431          
BLAST of CV885130 vs. ExPASy Swiss-Prot
Match: SAHH_THEAC (Adenosylhomocysteinase OS=Thermoplasma acidophilum GN=ahcY PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.701e-22
Identity = 64/189 (33.86%), Postives = 102/189 (53.97%), Query Frame = -2
Query:  347 VIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADG 913
            VIVTEIDPI A +A+M+G QV  + + + DAD+ +T TG KD++  +     K N ++ N GHF+NE+ V  +E    ++   ++    R+   E  + + ++A+GRL+NL    GHP  +M  SF  Q +    L   K+  K E+KVY +P  +D  V           L +L +EQ  Y++   +G
Sbjct:  225 VIVTEIDPIKANEAIMDGFQVRRMNNAIRDADMVITATGMKDVVKYEDALVAKKNIVLANAGHFNNEVAVSEIEK-RSLEVNEVREFVKRYRL-ENGNTVDIIADGRLVNLAAGQGHPVEIMDLSFALQALTAEYL--VKNHDKLERKVYPVPADIDRYVAEIRLKQFGGELDQLNEEQIKYLNSWDEG 409          
BLAST of CV885130 vs. ExPASy Swiss-Prot
Match: SAHH_METAC (Adenosylhomocysteinase OS=Methanosarcina acetivorans GN=ahcY PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.047e-21
Identity = 67/187 (35.83%), Postives = 100/187 (53.48%), Query Frame = -2
Query:  362 VIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSG---IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYIS 913
            VIVTE+DPI AL+A M+G +V+ + D     +IFVTTTGN+DI+  +H K M + A++ N GHF+ EID+  L +      +    +T R    E + G   I V+AEGRL+NL    GHP+ VM  SF NQ +    +    +       V+ +P+ +D  V           +  LT +Q  Y++
Sbjct:  229 VIVTEVDPIRALEARMDGYRVMRMADAARLGEIFVTTTGNRDILTAEHFKVMPDGAVLANSGHFNVEIDMEALTS------LAKSVKTVRHNIKEYDIGDRRINVIAEGRLVNLAAGDGHPAEVMDMSFANQALCVRYI----AENTLLNGVHGVPRGIDTYVAKLKLESMGISIDELTSKQECYMT 405          
BLAST of CV885130 vs. ExPASy Swiss-Prot
Match: SAHH_METTH (Adenosylhomocysteinase OS=Methanobacterium thermoautotrophicum GN=ahcY PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.788e-21
Identity = 66/193 (34.20%), Postives = 102/193 (52.85%), Query Frame = -2
Query:  347 VIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRIT--IKPQTDRWVFPETNSGIIVLAEGRLMNLGC--ATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADG 913
            VIVTE+DPI AL+A M+G +V+ + D + +ADI +T TGN D++       MK+  ++ N GHF+ EI+   LE    + R T  +K   + ++ P+    I +LAEGRL+NL      GHP+ +M  SF  Q ++   L +EK     +  VY  P  +D  V           +  LT++Q  Y+    +G
Sbjct:  232 VIVTEVDPIRALEARMDGFRVMKVSDAVKEADILITATGNTDVVSESEFMNMKDGCVMANSGHFNVEINREALEE---LSRETGKVKEDIEVFIMPDGRK-IYLLAEGRLVNLASERGQGHPAEIMDMSFAMQALSARHLLQEKP----DPGVYRAPDEIDLMVARMKLDAMGIEIDELTEKQRLYLENWEEG 416          
BLAST of CV885130 vs. ExPASy Swiss-Prot
Match: SAHH_HALSA (Adenosylhomocysteinase OS=Halobacterium salinarium GN=ahcY PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.414e-18
Identity = 67/211 (31.75%), Postives = 99/211 (46.92%), Query Frame = -2
Query:  365 YGDVXXXXXXXXXXXXARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL--------ETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLG--CATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYI 967
            YGD             A VIVTE++P  AL+A MEG  V+ + +     D+F+TTTGNK++I   H ++M +  ++ N GHFD E+++  L        E   GV+   +               + VLAEGRL+NL      GHP  VM  SF  Q +   EL   +   +Y   V+ +P  LD ++              LT +QA+Y+
Sbjct:  222 YGDCGRGVAKKAAGQNANVIVTEVEPRRALEAHMEGYDVMPMAEAAEVGDVFLTTTGNKNVITRAHFERMDDGVVLANAGHFDVEVNLDHLSELAVSEREAREGVREYEL----------ADGRRLNVLAEGRLVNLASPIGLGHPVGVMDQSFGVQAVCVRELVANRE--EYAAGVHNVPDELDIEIAEIKLAAEGVEYDALTDDQAEYM 420          
The following BLAST results are available for this feature:
BLAST of CV885130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
SAHH_HALWD2.110e-2235.71Adenosylhomocysteinase OS=Haloquadratum walsbyi (s... [more]
SAHH_THEAC4.701e-2233.86Adenosylhomocysteinase OS=Thermoplasma acidophilum... [more]
SAHH_METAC1.047e-2135.83Adenosylhomocysteinase OS=Methanosarcina acetivora... [more]
SAHH_METTH6.788e-2134.20Adenosylhomocysteinase OS=Methanobacterium thermoa... [more]
SAHH_HALSA2.414e-1831.75Adenosylhomocysteinase OS=Halobacterium salinarium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885130 ID=CV885130; Name=CV885130; organism=Citrus sinensis; type=EST; length=968bp
CCTTTTTTTTTATATCATTCATCAGTAAACAATAAGGATAACAAGATGCA
GCAAAGCAAGCAAAACTTAAAACTGCATCAAATACAACATAATCCAACAC
GGCCCCATCCAAAACCTTATTCAAATCCCAAATGGTCTTCAATCAACTGA
AACAAATCCGTTTCTTTCCTCCAACTTTCCCACCACCCAAACACACACTA
CTACCAAATTTAAACCTAACATCCTACTACAGATCATCATTGAAAACAAT
CAAGCCGGCCAAATATTTTGTTTCTTTCCCTCAAAACATTCACTCTTCTT
CTTCTTCTTCTTCCACTTAGTACCTGTAGTGAAGAGGCTTGTAAGGACCA
TCGGCGGACACACTGATGTAGTCAGCCTGCTCCTTGGTGAGCCTGGTGAG
CTTAGCTCCAAGTTTGCCAAGGTGAAGAGCAGCAACCTTCTCATCGAGGT
GCTTGGGCAGAACATACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCC
TTCCAGAGCTCAAGCTGGGCAATCACCTGATTGGTGAAGGAACAGGACAT
CACAAAGCTGGGGTGCCCAGTGGCACATCCCAAGTTCATGAGACGTCCCT
CAGCCAACACGATGATGCCTGAGTTGGTCTCGGGGAAGACCCACCTATCA
GTTTGGGGCTTGATGGTAATGCGCTTAACACCCGGGTAGGTCTCAAGACC
GAGCACATCAATTTCATTATCAAAGTGACCAATGTTGCAAACAATTGCAT
TGTTCTTCATCTTCTTCATGTGGTCAACCATGATGATGTCCTTGTTACCG
GTGGTGGTAACAAAGATGTCAGCATCGGAGAGGACATCCTCAAGGGTTAG
GACTTGAAGACCCTCCATAAGAGCCTGGAGAGCGCAAATTGGATCAATCT
CGGTAACAATTACACGAGCACCGGCTTGCTTCNAAGCAGCAGCACAACCC
TTGCCAACATCACCATAA
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