CV885128
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 6.954e-21 Identity = 59/176 (33.52%), Postives = 98/176 (55.68%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+ ++++ L + ++ G VE AEVIY++ T +SR F FV M +V++A +EK N ++ GR + VN + + + + ++VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT +L+ LEG+ IRVN A Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320 HSP 2 Score: 83.5741 bits (205), Expect = 1.960e-15 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -3 Query: 605 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 844 A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N I L+G + GR I+VN+ E+ Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.696e-14 Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = -3 Query: 311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841 + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F + L G++IR N A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 3.696e-14 Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = -3 Query: 311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841 + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F + L G++IR N A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.827e-14 Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCF 340 HSP 2 Score: 77.7962 bits (190), Expect = 1.075e-13 Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+NG + R++ V + + +L E +N VY+ N + V E LK+ FS+ G+ LS KV+R P KS GFGFV++ +N + G+ I V +A Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.834e-13 Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = -3 Query: 311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841 R +Y+GN+ R++ + ++ + G + ++I + + + FV DA A + +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F + L G++IR N A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173 HSP 2 Score: 68.1662 bits (165), Expect = 8.520e-11 Identity = 47/179 (26.26%), Postives = 82/179 (45.81%), Query Frame = -3 Query: 323 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIR 835 V++G++ I +++ G + A V+ D TG+S+ + FV DA I + G +GGR+I+ N T KP + + L+ ED SP VY G +A +T +++++ FS GQ++ +V G+ FV F S+N + +EG ++ Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.834e-13 Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E A + +EK+NG +G + V +K ++ Q + F S +Y+ NL +V E LK+ FSE G V S+KV+ P S GFGFV + Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAY 379
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + + +D +A N ++YV ++ + ++ + +K F G++ S + R P T K G+GF+ + S+N L GQ +RV KA Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + + +D +A N ++YV ++ + ++ + +K F G++ S + R P T K G+GF+ + S+N L GQ +RV KA Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + + +D +A N ++YV ++ + ++ + +K F G++ S + R P T K G+GF+ + S+N L GQ +RV KA Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + + +D +A N ++YV ++ + ++ + +K F G++ S + R P T K G+GF+ + S+N L GQ +RV KA Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302 The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bpback to top |