CV885128

Overview
NameCV885128
Unique NameCV885128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.954e-21
Identity = 59/176 (33.52%), Postives = 98/176 (55.68%), Query Frame = -3
Query:  311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838
            ++++GN+  ++++  L  + ++ G VE AEVIY++ T +SR F FV M +V++A   +EK N  ++ GR + VN       + + +          +  ++VYVGNL   V +  L++ FSE G+V+ A+V+    T +S GFGFVT            +L+   LEG+ IRVN A
Sbjct:  151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320          

HSP 2 Score: 83.5741 bits (205), Expect = 1.960e-15
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  605 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 844
            A RVY+GN+P ++DN  L ++  EHG V +A V+YD+ TGRSR F FV M  V++ N  I  L+G  + GR I+VN+ E+
Sbjct:  243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.696e-14
Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841
            + +Y+GN+ R++    + ++  + G  +  ++I D  T  +  + FV       A A +  +NG +I G+E+KVN    P  Q  D S      +      + V+VG+L+  +T+E +K  F+  G++  A+V++   T KS G+GFV+F            +    L G++IR N A
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.696e-14
Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841
            + +Y+GN+ R++    + ++  + G  +  ++I D  T  +  + FV       A A +  +NG +I G+E+KVN    P  Q  D S      +      + V+VG+L+  +T+E +K  F+  G++  A+V++   T KS G+GFV+F            +    L G++IR N A
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.827e-14
Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            VYI N    +D++ L ++  + G     +V+ D   G+S+ F FV  +  EDAN  +E++NG EI G+ I V   +K +  Q +L      L Q   S +      +Y+ NL  T+  E L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCF 340          

HSP 2 Score: 77.7962 bits (190), Expect = 1.075e-13
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            V+I N+ ++IDN  L       G +   +V+ D+    S+ +AFV  +T E A+  IEK+NG  +  R++ V     +   + +L     E +N       VY+ N  + V  E LK+ FS+ G+ LS KV+R P   KS GFGFV++            +N   + G+ I V +A
Sbjct:  101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.834e-13
Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841
            R +Y+GN+ R++    + ++  + G  +  ++I +  +     + FV      DA A +  +NG +I G+E+KVN    P  Q      + + SN     + V+VG+L+  +T+E +K  F+  G++  A+V++   T KS G+GFV+F            +    L G++IR N A
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173          

HSP 2 Score: 68.1662 bits (165), Expect = 8.520e-11
Identity = 47/179 (26.26%), Postives = 82/179 (45.81%), Query Frame = -3
Query:  323 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIR 835
            V++G++   I  +++       G +  A V+ D  TG+S+ + FV      DA   I  + G  +GGR+I+ N  T KP       + +   L+ ED     SP    VY G +A  +T +++++ FS  GQ++  +V          G+ FV F           S+N + +EG  ++
Sbjct:   99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.834e-13
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            VY+ N+P+ I  DEL K   + G +  A V+ D+ +G SR F FV  +  E A + +EK+NG  +G   + V   +K      ++     Q   + F  S    +Y+ NL  +V  E LK+ FSE G V S+KV+  P    S GFGFV +
Sbjct:  231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAY 379          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   + +D    +A   N      ++YV ++ + ++ + +K  F   G++ S  + R P T K  G+GF+ +           S+N   L GQ +RV KA
Sbjct:  135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   + +D    +A   N      ++YV ++ + ++ + +K  F   G++ S  + R P T K  G+GF+ +           S+N   L GQ +RV KA
Sbjct:  129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   + +D    +A   N      ++YV ++ + ++ + +K  F   G++ S  + R P T K  G+GF+ +           S+N   L GQ +RV KA
Sbjct:  135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838
            RVY+G+I   +  D + +     G ++  ++ +D  T + + FAFV  +  E A   +E++N   +GGR IKV    NI +   + +D    +A   N      ++YV ++ + ++ + +K  F   G++ S  + R P T K  G+GF+ +           S+N   L GQ +RV KA
Sbjct:  130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302          
The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ROC3_ARATH6.954e-2133.5231 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
TIA1_MOUSE3.696e-1427.53Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN3.696e-1427.53Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
PABP4_HUMAN4.827e-1435.95Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
TIAR_HUMAN1.834e-1327.68Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
PABP3_ARATH1.834e-1335.10Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PUF60_RAT5.337e-1327.78Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB5.337e-1327.78Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE5.337e-1327.78Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN5.337e-1327.78Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bp
TTTTCTAACGTGATTGTCATTAAAGCCAAAATAGCATTAGAAATTCGCAA
GGTACAAGAACAAAGGTTTGAGCTATTCAGAATATCAACCAAATGAAGTG
AAGCCTGCAAACAAAGTGCTTGGCTCCACTTTGTTGAACTTGAACGCTTC
ACATCCCTCGACCGAGAACCAGTAAGCTCCTACATCATAACAATATAAAA
AAGAGAACTACAATACTACTAATTCATGTGTTTTACATTTCAAATACAAT
GGTTGCAATAAGTAGAACACTCTCCAGAATCCTATAGATGCTGCCACGGG
TCACATACTATGCCTTGTTTACACGAATTCGTTGCCCTTCCAGCAGAGAA
TTGTTAAGAGAAGAGATGGCAGCTTCAGCATCCTCTTCTGAAGAGAAGGT
AACAAACCCAAAACCAGATGATTTTGATGTTCCTGGAACCCGCAAAACCT
TTGCACTAAGAACCTGTCCCTTCTCAGAGAAACACTTTTTGAGCATTTCC
GAGGTCACTGTCTTTGCAAGATTTCCTACATAAACTTTATACGGACTGTC
CACAAAGTTAGAATCCTCTGCCTGGAGGAGGGACAAATCAACTTGCACCA
AAGGTTTCTCTGTGATGTTTACTTTGATCTCACGTCCACCAATTTCAGTG
CCGTTCAGTTTCTCAATCACTGCATTTGCATCCTCAACAGTTTTCATCAT
AACAAAGGCAAATCGGCGACTCCTTCCAGTGTACTTATCATAAATAACCT
CAGCTTTCTCGACGGCGCCGTGTTCTTGAACAATCTTTGTAAGTTCATCA
TTATCAATATTTCTAGGAATGTTACCAATATAGACCCTCCTAGCAAACTC
TGAAGACGTGTCAACCGATGATGATGATGATGATGTAGTTTCTTCAGCTA
CTGCAAAGAGTCTCGTAGTGGATTCTTCGGTGCTTGCTGTCTTGAGATTT
GTGCAAGAATATGAGAGTTTGGGAAATCTGATTT
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