CV885128
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV NI + + +D +A N ++YV ++ + ++ + +K F G++ S + R P T K G+GF+ + S+N L GQ +RV KA Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI-IDQLAEEARAFN------RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 48/176 (27.27%), Postives = 84/176 (47.73%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR IKV + AE++ + ++YV ++ ++ + +K F G++ S + R P T K GFGF+ + S+N L GQ +RV KA Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYN---RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 51/151 (33.77%), Postives = 81/151 (53.64%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+V YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 69.707 bits (169), Expect = 2.928e-11 Identity = 50/176 (28.41%), Postives = 82/176 (46.59%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 +++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+NG + GR++ V + + +L E N VY+ N + + E LK F + G LS KV+ + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.970e-13 Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = -3 Query: 320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP-------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835 VY+ N+ + +D+L E+G + A V+ D G+S+ F FV + +DA +E LNG + +E V +K V+ + +L +A D F S +YV NL +++ E LK+ FS G V S+KV+R P GTSK G GFV F L+ ++E + + V Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAAD-KFQSS--NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK--GSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390 HSP 2 Score: 73.559 bits (179), Expect = 2.028e-12 Identity = 54/178 (30.34%), Postives = 83/178 (46.63%), Query Frame = -3 Query: 311 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 844 A ++I N+ +ID+ L G + +V D +G+S+ + FV E A IEKLNG + +++ V P ++ A + F + VYV NLA++ T + LK F E G++ SA V++ G KS GFGFV F SLN + + V +A Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG----PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKNAFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 9.103e-13 Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG------GREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VY+ N+P+ I +DEL K ++G + A V+ D+ +G SR F FV + E A +EK+NG +G GR K + E+ L + Q S F +Y+ NL +V E LK+ FSE G V S KV+ + S GFGFV + Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRR---KFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVM-MNSQGLSRGFGFVAY 375 HSP 2 Score: 69.3218 bits (168), Expect = 3.825e-11 Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 V+I N+ +IDN L + G + +V D GRS+ + FV + E A A I+KLNG + +++ V + + +S V S VYV NL K +T + LKK F + G + SA V++ + S FGFV F Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRA------RSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK-DQSGNSRSFGFVNF 272
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.189e-12 Identity = 47/178 (26.40%), Postives = 90/178 (50.56%), Query Frame = -3 Query: 317 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVN 835 +++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++ G EI GR I ++ T KP D + F D+P + +++GNL+ + + + F++ G+V+S ++ P T + GFG+V F +L ++ + +R++ Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.028e-12 Identity = 50/192 (26.04%), Postives = 91/192 (47.40%), Query Frame = -3 Query: 311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841 R +Y+GN+ R++ + ++ + G + ++I ++ R + + FV DA A + +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F + L G++IR N A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190 HSP 2 Score: 69.3218 bits (168), Expect = 3.825e-11 Identity = 47/179 (26.26%), Postives = 82/179 (45.81%), Query Frame = -3 Query: 323 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIR 835 V++G++ I +++ G + A V+ D TG+S+ + FV DA I + G +GGR+I+ N T KP + + L+ ED SP VY G +A +T +++++ FS GQ++ +V G+ FV F S+N + +EG ++ Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.649e-12 Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 71.2478 bits (173), Expect = 1.006e-11 Identity = 51/176 (28.98%), Postives = 83/176 (47.16%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK+ F + G LS KV+ + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.649e-12 Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 70.8626 bits (172), Expect = 1.315e-11 Identity = 51/176 (28.98%), Postives = 83/176 (47.16%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK+ F + G LS KV+ + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.459e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = -3 Query: 602 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 838 ++++GN+ N+D+ +L ++ + G VE EVIYDK TGRSR F FV M T + A ++ NG E GR ++VN P Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178 The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bpback to top |