CV885128
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.518e-12 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 70.4774 bits (171), Expect = 1.717e-11 Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK F + G LS KV+ + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 4.518e-12 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 70.4774 bits (171), Expect = 1.717e-11 Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK F + G LS KV+ + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.518e-12 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340 HSP 2 Score: 70.4774 bits (171), Expect = 1.717e-11 Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 ++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R++ V + + +L E +N VY+ N + + E LK F + G LS KV+ + KS GFGFV+F +N L G++I V +A Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 5.901e-12 Identity = 47/177 (26.55%), Postives = 83/177 (46.89%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 RVY+G+I + D + G ++ + +D T + + FAFV + E A +E++NG +GGR IKV + P Q + +Q E +F ++YV ++ ++ E +K F G +L K+ + G+GF+ + S+N L GQ +RV ++ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF----NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 5.901e-12 Identity = 51/176 (28.98%), Postives = 88/176 (50.00%), Query Frame = -3 Query: 320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835 VY NI + +E K+ + +G + + D + G+S+ F FV + E A +++LN EI G++I V +K +++ Q E++ S Y+ +++ NL T+ SE L++ F G + SA+V+ V T KS GFGFV F +N ++ G+ + V Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVM-VDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.006e-11 Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D++ L + ++GA +V+ D + G+SR F FV + EDA ++ +NG ++ G+ I V +K + Q +L + + Y+ +YV NL + E L+K F+ G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCF 340
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11 Identity = 49/177 (27.68%), Postives = 82/177 (46.33%), Query Frame = -3 Query: 311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841 R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++ LNG +I +K+N Q++ S+ D + ++VG+L V E L+ F + LS V+ T S G+GFV+F S+ L G+ +R+N A Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-----------FQSQQSSS-DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11 Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = -3 Query: 311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835 ++I N+ IDN L G + +V D++ G+S+ F FV +T E A A IE +NG + RE+ V K + + D S + +NF + +YV N+ + E +K FS G++ S L KS GFGFV F LN+ + GQ+I V +A Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG---KHISKKDRESKFEEMKANFTN----IYVKNIDLNYSEESFEKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRA 308
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11 Identity = 45/151 (29.80%), Postives = 75/151 (49.67%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 V++G + N+D+ L + +E+G + A VI D +GRS+ + +V +T E A A + EI GR + ++++ P Q NF D + V+VGNL+ T + L F G + S ++ P + + GFG+VTF Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS-NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11 Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = -3 Query: 395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835 VYI N ++D+ L +I G +V+ D TGRSR F FV E+A + ++NG E+ GR I V +K + ++ ++ E N +YV NL + + L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCF 340 The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bpback to top |