CV885128

Overview
NameCV885128
Unique NameCV885128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.518e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            VYI N   ++D++ L  +  + G     +V+ D+ +G+S+ F FV  +  EDA   ++++NG E+ G++I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340          

HSP 2 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            ++I N+ ++IDN  L       G +   +V+ D+    S+ + FV  +T E A   IEK+NG  +  R++ V     +   + +L     E +N       VY+ N  + +  E LK  F + G  LS KV+    + KS GFGFV+F            +N   L G++I V +A
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.518e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            VYI N   ++D++ L  +  + G     +V+ D+ +G+S+ F FV  +  EDA   ++++NG E+ G++I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340          

HSP 2 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            ++I N+ ++IDN  L       G +   +V+ D+    S+ + FV  +T E A   IEK+NG  +  R++ V     +   + +L     E +N       VY+ N  + +  E LK  F + G  LS KV+    + KS GFGFV+F            +N   L G++I V +A
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.518e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            VYI N   ++D++ L  +  + G     +V+ D+ +G+S+ F FV  +  EDA   ++++NG E+ G++I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340          

HSP 2 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            ++I N+ ++IDN  L       G +   +V+ D+    S+ + FV  +T E A   IEK+NG  +  R++ V     +   + +L     E +N       VY+ N  + +  E LK  F + G  LS KV+    + KS GFGFV+F            +N   L G++I V +A
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.901e-12
Identity = 47/177 (26.55%), Postives = 83/177 (46.89%), Query Frame = -3
Query:  311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838
            RVY+G+I   +  D +       G ++   + +D  T + + FAFV  +  E A   +E++NG  +GGR IKV   +  P  Q  +  +Q E  +F     ++YV ++   ++ E +K  F   G +L  K+ +        G+GF+ +           S+N   L GQ +RV ++
Sbjct:  131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF----NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.901e-12
Identity = 51/176 (28.98%), Postives = 88/176 (50.00%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            VY  NI  +   +E  K+ + +G +    +  D + G+S+ F FV  +  E A   +++LN  EI G++I V   +K   +++    Q E++     S Y+   +++ NL  T+ SE L++ F   G + SA+V+ V  T KS GFGFV F            +N  ++ G+ + V
Sbjct:  234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVM-VDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.006e-11
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            VYI N   ++D++ L +   ++GA    +V+ D + G+SR F FV  +  EDA   ++ +NG ++ G+ I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K F+  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCF 340          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11
Identity = 49/177 (27.68%), Postives = 82/177 (46.33%), Query Frame = -3
Query:  311 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 841
            R +Y+GN+ + I  D L +  Q  G +   +++ DK   ++  +AFV      DAN  ++ LNG +I    +K+N              Q++ S+  D  + ++VG+L   V  E L+  F +    LS  V+    T  S G+GFV+F           S+    L G+ +R+N A
Sbjct:   75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-----------FQSQQSSS-DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11
Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            ++I N+   IDN  L       G +   +V  D++ G+S+ F FV  +T E A A IE +NG  +  RE+ V    K + + D  S  +   +NF +    +YV N+    + E  +K FS  G++ S   L      KS GFGFV F            LN+  + GQ+I V +A
Sbjct:  142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG---KHISKKDRESKFEEMKANFTN----IYVKNIDLNYSEESFEKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRA 308          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11
Identity = 45/151 (29.80%), Postives = 75/151 (49.67%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            V++G +  N+D+  L +  +E+G +  A VI D  +GRS+ + +V  +T E A A +      EI GR + ++++  P         Q    NF D   +    V+VGNL+   T + L   F   G + S ++   P + +  GFG+VTF
Sbjct:  265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS-NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11
Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            VYI N   ++D+  L +I    G     +V+ D  TGRSR F FV     E+A   + ++NG E+ GR I V   +K +     ++     ++ E  N       +YV NL   +  + L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCF 340          
The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PABP1_PONAB4.518e-1233.11Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN4.518e-1233.11Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN4.518e-1233.11Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PUF68_DROME5.901e-1226.55Poly(U)-binding-splicing factor half pint OS=Droso... [more]
PABP_DEBHA5.901e-1228.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPB_XENLA1.006e-1133.11Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PUB1_YEAST1.315e-1127.68Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
PABP_CANAL1.315e-1131.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
GAR2_SCHPO1.315e-1129.80Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
EPAB_XENTR1.315e-1134.21Embryonic polyadenylate-binding protein OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bp
TTTTCTAACGTGATTGTCATTAAAGCCAAAATAGCATTAGAAATTCGCAA
GGTACAAGAACAAAGGTTTGAGCTATTCAGAATATCAACCAAATGAAGTG
AAGCCTGCAAACAAAGTGCTTGGCTCCACTTTGTTGAACTTGAACGCTTC
ACATCCCTCGACCGAGAACCAGTAAGCTCCTACATCATAACAATATAAAA
AAGAGAACTACAATACTACTAATTCATGTGTTTTACATTTCAAATACAAT
GGTTGCAATAAGTAGAACACTCTCCAGAATCCTATAGATGCTGCCACGGG
TCACATACTATGCCTTGTTTACACGAATTCGTTGCCCTTCCAGCAGAGAA
TTGTTAAGAGAAGAGATGGCAGCTTCAGCATCCTCTTCTGAAGAGAAGGT
AACAAACCCAAAACCAGATGATTTTGATGTTCCTGGAACCCGCAAAACCT
TTGCACTAAGAACCTGTCCCTTCTCAGAGAAACACTTTTTGAGCATTTCC
GAGGTCACTGTCTTTGCAAGATTTCCTACATAAACTTTATACGGACTGTC
CACAAAGTTAGAATCCTCTGCCTGGAGGAGGGACAAATCAACTTGCACCA
AAGGTTTCTCTGTGATGTTTACTTTGATCTCACGTCCACCAATTTCAGTG
CCGTTCAGTTTCTCAATCACTGCATTTGCATCCTCAACAGTTTTCATCAT
AACAAAGGCAAATCGGCGACTCCTTCCAGTGTACTTATCATAAATAACCT
CAGCTTTCTCGACGGCGCCGTGTTCTTGAACAATCTTTGTAAGTTCATCA
TTATCAATATTTCTAGGAATGTTACCAATATAGACCCTCCTAGCAAACTC
TGAAGACGTGTCAACCGATGATGATGATGATGATGTAGTTTCTTCAGCTA
CTGCAAAGAGTCTCGTAGTGGATTCTTCGGTGCTTGCTGTCTTGAGATTT
GTGCAAGAATATGAGAGTTTGGGAAATCTGATTT
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