CV885128

Overview
NameCV885128
Unique NameCV885128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.315e-11
Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  DEL  +    G VE A++I DK  G S  + FV   T +DA   I  LNG  +  + IKV+               A  S+ V     +Y+  L +T+T + ++  FS  G++++++VL    T  S G  F+ F
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS--------------YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 50/177 (28.25%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            VY+ N+   +DN +  +I +  G V    +  D+  G+SR F FV  +  E A   ++++N  EI G+++ V   +K   ++D  L +  +S  ++   K     ++V NL  ++ SE L++ F   G + SA+V+ V    KS GFGFV F            +N  +++G+ + V
Sbjct:  241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLD-ELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVM-VDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E AN  I+ +NG  +  +++ V  +I++K       S  +   +NF +    VY+ N+ + VT E  +K F + G++ SA + R     KS GFGFV F            +N+  ++GQ++ V +A
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----VYIKNIDQEVTDEEFRKMFEKFGEITSATLSR-DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            ++I N+   IDN  L +     G V   +V  D+  G SR F FV  K   DA   IE +NG  + G E+ V  ++ +K  +    S L+   +NF +    +YV N+    T E  ++ FS+ G+++SA  L      K  GFGFV F            LN    + Q + V +A
Sbjct:  140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRI----SKLEEAKANFTN----IYVKNIDVETTDEEFEQLFSQYGEIVSA-ALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E AN  I+ +NG  +  +++ V  +I++K       S  +   +NF +    VY+ N+ + VT E  +K F + G++ SA + R     KS GFGFV F            +N+  ++GQ++ V +A
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----VYIKNIDQEVTDEEFRKMFEKFGEITSATLSR-DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 40/145 (27.59%), Postives = 73/145 (50.34%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  DE   +    G +E  +++ DK TG+S  + FV      DA+  I  LNG ++  + IKV+           S     D+N       +YV  L KT++ + +++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.242e-11
Identity = 52/176 (29.55%), Postives = 87/176 (49.43%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            +Y+ NI      ++L K+   +GA+    +  D   G+S+ F FV  +  E A   +E+LN  EI G++I V   +K   +++    Q E++     S Y+   +++ NL  T+ SE L++ F   G + SA+V+ V  T KS GFGFV F            +N  +  G+ + V
Sbjct:  235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDA-EGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVM-VDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYV 408          

HSP 2 Score: 68.1662 bits (165), Expect = 8.520e-11
Identity = 55/176 (31.25%), Postives = 81/176 (46.02%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            ++I N+   IDN  L       G +   +V  D   G+S+ F FV  +T E A A IE +NG  +  RE+ V    K + + D  S  +   +NF +    +YV N+    + E LKK F+  G + S   L      KS GFGFV +            LN+  + GQ+I V +A
Sbjct:  142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDM-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG---KHISKKDRESKFEEIKANFTN----IYVKNIDLEYSEEDLKKLFTPYGAITSI-YLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRA 308          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.242e-11
Identity = 42/145 (28.97%), Postives = 73/145 (50.34%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.928e-11
Identity = 42/145 (28.97%), Postives = 73/145 (50.34%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.928e-11
Identity = 42/145 (28.97%), Postives = 73/145 (50.34%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ELAV1_HUMAN1.315e-1129.66ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
PABP_PICGU1.717e-1128.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI1.717e-1129.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_KLULA1.717e-1130.51Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU1.717e-1129.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV3_MOUSE1.717e-1127.59ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
PABP_PICST2.242e-1129.55Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENTR2.242e-1128.97ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_PONAB2.928e-1128.97ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE2.928e-1128.97ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bp
TTTTCTAACGTGATTGTCATTAAAGCCAAAATAGCATTAGAAATTCGCAA
GGTACAAGAACAAAGGTTTGAGCTATTCAGAATATCAACCAAATGAAGTG
AAGCCTGCAAACAAAGTGCTTGGCTCCACTTTGTTGAACTTGAACGCTTC
ACATCCCTCGACCGAGAACCAGTAAGCTCCTACATCATAACAATATAAAA
AAGAGAACTACAATACTACTAATTCATGTGTTTTACATTTCAAATACAAT
GGTTGCAATAAGTAGAACACTCTCCAGAATCCTATAGATGCTGCCACGGG
TCACATACTATGCCTTGTTTACACGAATTCGTTGCCCTTCCAGCAGAGAA
TTGTTAAGAGAAGAGATGGCAGCTTCAGCATCCTCTTCTGAAGAGAAGGT
AACAAACCCAAAACCAGATGATTTTGATGTTCCTGGAACCCGCAAAACCT
TTGCACTAAGAACCTGTCCCTTCTCAGAGAAACACTTTTTGAGCATTTCC
GAGGTCACTGTCTTTGCAAGATTTCCTACATAAACTTTATACGGACTGTC
CACAAAGTTAGAATCCTCTGCCTGGAGGAGGGACAAATCAACTTGCACCA
AAGGTTTCTCTGTGATGTTTACTTTGATCTCACGTCCACCAATTTCAGTG
CCGTTCAGTTTCTCAATCACTGCATTTGCATCCTCAACAGTTTTCATCAT
AACAAAGGCAAATCGGCGACTCCTTCCAGTGTACTTATCATAAATAACCT
CAGCTTTCTCGACGGCGCCGTGTTCTTGAACAATCTTTGTAAGTTCATCA
TTATCAATATTTCTAGGAATGTTACCAATATAGACCCTCCTAGCAAACTC
TGAAGACGTGTCAACCGATGATGATGATGATGATGTAGTTTCTTCAGCTA
CTGCAAAGAGTCTCGTAGTGGATTCTTCGGTGCTTGCTGTCTTGAGATTT
GTGCAAGAATATGAGAGTTTGGGAAATCTGATTT
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