CV885128

Overview
NameCV885128
Unique NameCV885128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.928e-11
Identity = 42/145 (28.97%), Postives = 73/145 (50.34%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 42/142 (29.58%), Postives = 72/142 (50.70%), Query Frame = -3
Query:  395 IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 820
            +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 42/145 (28.97%), Postives = 70/145 (48.28%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +EL  +    G VE A++I DK  G S  + FV   T +DA   I  LNG  +  + IKV+               A  S+ V     +Y+  L +T+T + ++  FS  G++++++VL    T  S G  F+ F
Sbjct:   24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVS--------------YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F            +N  ++  + + V
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F            +N  ++  + + V
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F            +N  ++  + + V
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F            +N  ++  + + V
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = -3
Query:  320 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRV 835
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F            +N  ++  + + V
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.995e-11
Identity = 40/145 (27.59%), Postives = 73/145 (50.34%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  DE   +    G +E  +++ DK TG+S  + FV      DA+  I  LNG ++  + IKV+           S     D+N       +YV  L KT++ + +++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.524e-11
Identity = 51/177 (28.81%), Postives = 85/177 (48.02%), Query Frame = -3
Query:  311 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 835
            V+I N+   IDN  L       G +   +V  D++ G S+ + FV  +T E A   I+ +NG  +  +++ V  +I +K       S  +   +NF +    VYV N+ +  T E  +  F + G++ SA + R   + KS GFGFV F           +LN+   +GQ++ V +A
Sbjct:  145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQ----SKFEEMKANFTN----VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRA 312          
The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ELAV2_HUMAN2.928e-1128.97ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV2_RAT3.825e-1129.58ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV1_MOUSE3.825e-1128.97ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
PABP5_PONPY4.995e-1127.84Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR4.995e-1127.84Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_HYLLA4.995e-1127.84Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN4.995e-1127.84Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO4.995e-1127.84Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
ELAV3_HUMAN4.995e-1127.59ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
PABP_COCIM6.524e-1128.81Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bp
TTTTCTAACGTGATTGTCATTAAAGCCAAAATAGCATTAGAAATTCGCAA
GGTACAAGAACAAAGGTTTGAGCTATTCAGAATATCAACCAAATGAAGTG
AAGCCTGCAAACAAAGTGCTTGGCTCCACTTTGTTGAACTTGAACGCTTC
ACATCCCTCGACCGAGAACCAGTAAGCTCCTACATCATAACAATATAAAA
AAGAGAACTACAATACTACTAATTCATGTGTTTTACATTTCAAATACAAT
GGTTGCAATAAGTAGAACACTCTCCAGAATCCTATAGATGCTGCCACGGG
TCACATACTATGCCTTGTTTACACGAATTCGTTGCCCTTCCAGCAGAGAA
TTGTTAAGAGAAGAGATGGCAGCTTCAGCATCCTCTTCTGAAGAGAAGGT
AACAAACCCAAAACCAGATGATTTTGATGTTCCTGGAACCCGCAAAACCT
TTGCACTAAGAACCTGTCCCTTCTCAGAGAAACACTTTTTGAGCATTTCC
GAGGTCACTGTCTTTGCAAGATTTCCTACATAAACTTTATACGGACTGTC
CACAAAGTTAGAATCCTCTGCCTGGAGGAGGGACAAATCAACTTGCACCA
AAGGTTTCTCTGTGATGTTTACTTTGATCTCACGTCCACCAATTTCAGTG
CCGTTCAGTTTCTCAATCACTGCATTTGCATCCTCAACAGTTTTCATCAT
AACAAAGGCAAATCGGCGACTCCTTCCAGTGTACTTATCATAAATAACCT
CAGCTTTCTCGACGGCGCCGTGTTCTTGAACAATCTTTGTAAGTTCATCA
TTATCAATATTTCTAGGAATGTTACCAATATAGACCCTCCTAGCAAACTC
TGAAGACGTGTCAACCGATGATGATGATGATGATGTAGTTTCTTCAGCTA
CTGCAAAGAGTCTCGTAGTGGATTCTTCGGTGCTTGCTGTCTTGAGATTT
GTGCAAGAATATGAGAGTTTGGGAAATCTGATTT
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