CV885128

Overview
NameCV885128
Unique NameCV885128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.524e-11
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = -3
Query:  395 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 835
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.524e-11
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +E   +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.524e-11
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +E   +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185          
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.524e-11
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = -3
Query:  395 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 829
            +  +P+N+  +E   +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180          
The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PABP5_MACMU6.524e-1131.13Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
ELAV4_RAT6.524e-1128.28ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE6.524e-1128.28ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN6.524e-1128.28ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bp
TTTTCTAACGTGATTGTCATTAAAGCCAAAATAGCATTAGAAATTCGCAA
GGTACAAGAACAAAGGTTTGAGCTATTCAGAATATCAACCAAATGAAGTG
AAGCCTGCAAACAAAGTGCTTGGCTCCACTTTGTTGAACTTGAACGCTTC
ACATCCCTCGACCGAGAACCAGTAAGCTCCTACATCATAACAATATAAAA
AAGAGAACTACAATACTACTAATTCATGTGTTTTACATTTCAAATACAAT
GGTTGCAATAAGTAGAACACTCTCCAGAATCCTATAGATGCTGCCACGGG
TCACATACTATGCCTTGTTTACACGAATTCGTTGCCCTTCCAGCAGAGAA
TTGTTAAGAGAAGAGATGGCAGCTTCAGCATCCTCTTCTGAAGAGAAGGT
AACAAACCCAAAACCAGATGATTTTGATGTTCCTGGAACCCGCAAAACCT
TTGCACTAAGAACCTGTCCCTTCTCAGAGAAACACTTTTTGAGCATTTCC
GAGGTCACTGTCTTTGCAAGATTTCCTACATAAACTTTATACGGACTGTC
CACAAAGTTAGAATCCTCTGCCTGGAGGAGGGACAAATCAACTTGCACCA
AAGGTTTCTCTGTGATGTTTACTTTGATCTCACGTCCACCAATTTCAGTG
CCGTTCAGTTTCTCAATCACTGCATTTGCATCCTCAACAGTTTTCATCAT
AACAAAGGCAAATCGGCGACTCCTTCCAGTGTACTTATCATAAATAACCT
CAGCTTTCTCGACGGCGCCGTGTTCTTGAACAATCTTTGTAAGTTCATCA
TTATCAATATTTCTAGGAATGTTACCAATATAGACCCTCCTAGCAAACTC
TGAAGACGTGTCAACCGATGATGATGATGATGATGTAGTTTCTTCAGCTA
CTGCAAAGAGTCTCGTAGTGGATTCTTCGGTGCTTGCTGTCTTGAGATTT
GTGCAAGAATATGAGAGTTTGGGAAATCTGATTT
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