CV885127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.375e-12 Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 VYI N ++D++ L + ++GA +V+ D + G+SR F FV + EDA ++ +NG ++ G+ I V +K + Q +L + + Y+ +YV NL + E L+K F+ G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCF 340
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11 Identity = 45/151 (29.80%), Postives = 75/151 (49.67%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 V++G + N+D+ L + +E+G + A VI D +GRS+ + +V +T E A A + EI GR + ++++ P Q NF D + V+VGNL+ T + L F G + S ++ P + + GFG+VTF Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS-NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11 Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 VYI N ++D+ L +I G +V+ D TGRSR F FV E+A + ++NG E+ GR I V +K + ++ ++ E N +YV NL + + L+K FS G + SAKV+ G SK GFGFV F Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCF 340
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11 Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = 2 Query: 296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 + +P+N+ DEL + G VE A++I DK G S + FV T +DA I LNG + + IKV+ A S+ V +Y+ L +T+T + ++ FS G++++++VL T S G F+ F Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS--------------YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11 Identity = 49/192 (25.52%), Postives = 90/192 (46.88%), Query Frame = 2 Query: 284 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 R +Y+GN+ R++ + ++ + G + ++I ++ R + + FV DA A + +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F + L ++IR N A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11 Identity = 40/145 (27.59%), Postives = 73/145 (50.34%), Query Frame = 2 Query: 296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 + +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG ++ + IKV+ S D+N +YV L KT++ + +++ FS+ G+++++++L T S G GF+ F Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11 Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++I N+ IDN L + G V +V D+ G SR F FV K DA IE +NG + G E+ V ++ +K + S L+ +NF + +YV N+ T E ++ FS+ G+++SA L K GFGFV F LN + Q + V +A Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRI----SKLEEAKANFTN----IYVKNIDVETTDEEFEQLFSQYGEIVSA-ALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11 Identity = 42/145 (28.97%), Postives = 73/145 (50.34%), Query Frame = 2 Query: 296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 + +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ S D+N +YV L KT+T + L++ FS+ G+++++++L T S G GF+ F Sbjct: 71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201 The following BLAST results are available for this feature:
BLAST of CV885127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885127 ID=CV885127; Name=CV885127; organism=Citrus sinensis; type=EST; length=871bpback to top |