CV885127

Overview
NameCV885127
Unique NameCV885127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885127_ssr52 microsatellite CV885127_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
CV885127_ssr240 microsatellite CV885127_ssr240:240..257. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4579 contig Csv1_Contig4579:2..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            VYI N   ++D++ L  +  + G     +V+ D+ +G+S+ F FV  +  EDA   ++++NG E+ G++I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            VYI N   ++D++ L  +  + G     +V+ D+ +G+S+ F FV  +  EDA   ++++NG E+ G++I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.375e-12
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            VYI N   ++D++ L +   ++GA    +V+ D + G+SR F FV  +  EDA   ++ +NG ++ G+ I V   +K +  Q +L     +      + Y+   +YV NL   +  E L+K F+  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCF 340          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11
Identity = 45/151 (29.80%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            V++G +  N+D+  L +  +E+G +  A VI D  +GRS+ + +V  +T E A A +      EI GR + ++++  P         Q    NF D   +    V+VGNL+   T + L   F   G + S ++   P + +  GFG+VTF
Sbjct:  265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS-NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11
Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            VYI N   ++D+  L +I    G     +V+ D  TGRSR F FV     E+A   + ++NG E+ GR I V   +K +     ++     ++ E  N       +YV NL   +  + L+K FS  G + SAKV+   G SK  GFGFV F
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCF 340          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11
Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = 2
Query:  296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            +  +P+N+  DEL  +    G VE A++I DK  G S  + FV   T +DA   I  LNG  +  + IKV+               A  S+ V     +Y+  L +T+T + ++  FS  G++++++VL    T  S G  F+ F
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS--------------YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11
Identity = 49/192 (25.52%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  284 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814
            R +Y+GN+ R++    + ++  + G  +  ++I ++   R               +  + FV      DA A +  +NG +I G+E+KVN    P  Q      + + SN     + V+VG+L+  +T+E +K  F+  G++  A+V++   T KS G+GFV+F            +    L  ++IR N A
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11
Identity = 40/145 (27.59%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            +  +P+N+  DE   +    G +E  +++ DK TG+S  + FV      DA+  I  LNG ++  + IKV+           S     D+N       +YV  L KT++ + +++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11
Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814
            ++I N+   IDN  L +     G V   +V  D+  G SR F FV  K   DA   IE +NG  + G E+ V  ++ +K  +    S L+   +NF +    +YV N+    T E  ++ FS+ G+++SA  L      K  GFGFV F            LN    + Q + V +A
Sbjct:  140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRI----SKLEEAKANFTN----IYVKNIDVETTDEEFEQLFSQYGEIVSA-ALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11
Identity = 42/145 (28.97%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            +  +P+N+  +EL  +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
The following BLAST results are available for this feature:
BLAST of CV885127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PABP1_HUMAN3.759e-1233.11Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN3.759e-1233.11Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABPB_XENLA8.375e-1233.11Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
GAR2_SCHPO1.094e-1129.80Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
EPAB_XENTR1.094e-1134.21Embryonic polyadenylate-binding protein OS=Xenopus... [more]
ELAV1_HUMAN1.094e-1129.66ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
TIAR_MOUSE1.429e-1125.52Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
ELAV3_MOUSE1.429e-1127.59ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
PABP_KLULA1.866e-1130.51Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENTR1.866e-1128.97ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885127 ID=CV885127; Name=CV885127; organism=Citrus sinensis; type=EST; length=871bp
CCTTGTTTGCCCCGCAGCCAAACGACTCAAATCAACGGCAATGACTTCAT
TATCATCATCATCATCTCTAATACTGTCTCAACAAAATCTCATTTTTTCA
AAAACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATT
TCCAAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCACCGAAG
AATCCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTACATCATCATCA
TCATCATCGGTTGACACGTCTTCAGAGTTTGCTAGGAGGGTCTATATTGG
TAACATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAG
AACACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGA
AGGAGTCGCCGATTTGCCTTTGTTATGATGAAAACTGTTGAGGATGCAAA
TGCAGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCA
AAGTAAACATCACAGAGAAACCTTTGGTGCAAGTTGATTTGTCCCTCCTC
CAGGCAGAGGATTCTAACTTTGTGGACAGTCCGTATAAAGTTTATGTAGG
AAATCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAGTGTTTCTCTG
AGAAGGGACAGGTTCTTAGTGCAAAGGTTTTGCGGGTTCCAGGAACATCA
AAATCATCTGGTTTTGGGTTTGTTACCTTCTCTTCAGAAGAGGATGCTGA
AGCTGCCATCTCTTCTCTTAACAATTCTCTGCTGGAAAGGCAACGAATTC
GTGTAAACAAGGCATAGTATGTGACCCGTGGCAGCATCTATAGGATTCTG
GAGAGTGTTCTACTTATTGCA
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