CV885127

Overview
NameCV885127
Unique NameCV885127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885127_ssr52 microsatellite CV885127_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
CV885127_ssr240 microsatellite CV885127_ssr240:240..257. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4579 contig Csv1_Contig4579:2..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            V++ NI  +ID+++L ++  E+G  E  +VI D  +G+S+ F FV  +T E A   +  L+G  I G+ + V   +K + ++     + E     +        +Y+ NL +T+  E LK+ FS  G +  AKV+   G  K  GFG V F
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 2
Query:  296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            +  +P+N+  +E   +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 2
Query:  296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            +  +P+N+  +E   +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 2
Query:  296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730
            +  +P+N+  +E   +    G +E  +++ DK TG+S  + FV     +DA   I  LNG  +  + IKV+           S     D+N       +YV  L KT+T + L++ FS+ G+++++++L    T  S G GF+ F
Sbjct:   50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 47/177 (26.55%), Postives = 80/177 (45.20%), Query Frame = 2
Query:  284 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814
            R +Y+GN+ + I  D L +  Q  G +   +++ DK   ++  +AFV      DAN  ++ LNG +I    +K+N              Q++ S+  D  + ++VG+L   V  E L+  F +    LS  V+    T  S G+GFV+F            +    L  + +R+N A
Sbjct:   75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-----------FQSQQSSS-DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238          
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 54/176 (30.68%), Postives = 82/176 (46.59%), Query Frame = 2
Query:  290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814
            ++I N+   IDN  L       G +   +V  D++ G+S+ F FV  +T E A A IE +NG  +  RE+ V    K + + D  S  +   +NF +    +YV N+    + E  +K FS  G++ S   L      KS GFGFV F            LN+  +  Q+I V +A
Sbjct:  142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG---KHISKKDRESKFEEMKANFTN----IYVKNIDLNYSEESFEKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRA 308          
The following BLAST results are available for this feature:
BLAST of CV885127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PABP5_PANTR5.429e-1131.13Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_MACMU5.429e-1131.13Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP5_HYLLA5.429e-1131.13Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN5.429e-1131.13Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO5.429e-1131.13Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
ELAV4_RAT5.429e-1128.28ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE5.429e-1128.28ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN5.429e-1128.28ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
PUB1_YEAST9.260e-1126.55Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
PABP_CANAL9.260e-1130.68Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885127 ID=CV885127; Name=CV885127; organism=Citrus sinensis; type=EST; length=871bp
CCTTGTTTGCCCCGCAGCCAAACGACTCAAATCAACGGCAATGACTTCAT
TATCATCATCATCATCTCTAATACTGTCTCAACAAAATCTCATTTTTTCA
AAAACCCACTTCACATTTCAATCAAGACAACCAATTCTTCAAATCAGATT
TCCAAAACTCTCATATTCTTTGCACAATCTCAAGACAGCAAGCACCGAAG
AATCCACTACGAGACTCTTTGCAGTAGCTGAAGAAACTACATCATCATCA
TCATCATCGGTTGACACGTCTTCAGAGTTTGCTAGGAGGGTCTATATTGG
TAACATTCCTAGAAATATTGATAATGATGAACTTACAAAGATTGTTCAAG
AACACGGCGCCGTCGAGAAAGCTGAGGTTATTTATGATAAGTACACTGGA
AGGAGTCGCCGATTTGCCTTTGTTATGATGAAAACTGTTGAGGATGCAAA
TGCAGTGATTGAGAAACTGAACGGCACTGAAATTGGTGGACGTGAGATCA
AAGTAAACATCACAGAGAAACCTTTGGTGCAAGTTGATTTGTCCCTCCTC
CAGGCAGAGGATTCTAACTTTGTGGACAGTCCGTATAAAGTTTATGTAGG
AAATCTTGCAAAGACAGTGACCTCGGAAATGCTCAAAAAGTGTTTCTCTG
AGAAGGGACAGGTTCTTAGTGCAAAGGTTTTGCGGGTTCCAGGAACATCA
AAATCATCTGGTTTTGGGTTTGTTACCTTCTCTTCAGAAGAGGATGCTGA
AGCTGCCATCTCTTCTCTTAACAATTCTCTGCTGGAAAGGCAACGAATTC
GTGTAAACAAGGCATAGTATGTGACCCGTGGCAGCATCTATAGGATTCTG
GAGAGTGTTCTACTTATTGCA
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