CV885127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 V++ NI +ID+++L ++ E+G E +VI D +G+S+ F FV +T E A + L+G I G+ + V +K + ++ + E + +Y+ NL +T+ E LK+ FS G + AKV+ G K GFG V F Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 V++ NI +ID+++L ++ E+G E +VI D +G+S+ F FV +T E A + L+G I G+ + V +K + ++ + E + +Y+ NL +T+ E LK+ FS G + AKV+ G K GFG V F Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 V++ NI +ID+++L ++ E+G E +VI D +G+S+ F FV +T E A + L+G I G+ + V +K + ++ + E + +Y+ NL +T+ E LK+ FS G + AKV+ G K GFG V F Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 V++ NI +ID+++L ++ E+G E +VI D +G+S+ F FV +T E A + L+G I G+ + V +K + ++ + E + +Y+ NL +T+ E LK+ FS G + AKV+ G K GFG V F Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 V++ NI +ID+++L ++ E+G E +VI D +G+S+ F FV +T E A + L+G I G+ + V +K + ++ + E + +Y+ NL +T+ E LK+ FS G + AKV+ G K GFG V F Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCF 348
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 2 Query: 296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 + +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ S D+N +YV L KT+T + L++ FS+ G+++++++L T S G GF+ F Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 2 Query: 296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 + +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ S D+N +YV L KT+T + L++ FS+ G+++++++L T S G GF+ F Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 2 Query: 296 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 730 + +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG + + IKV+ S D+N +YV L KT+T + L++ FS+ G+++++++L T S G GF+ F Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11 Identity = 47/177 (26.55%), Postives = 80/177 (45.20%), Query Frame = 2 Query: 284 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++ LNG +I +K+N Q++ S+ D + ++VG+L V E L+ F + LS V+ T S G+GFV+F + L + +R+N A Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA-----------FQSQQSSS-DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11 Identity = 54/176 (30.68%), Postives = 82/176 (46.59%), Query Frame = 2 Query: 290 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++I N+ IDN L G + +V D++ G+S+ F FV +T E A A IE +NG + RE+ V K + + D S + +NF + +YV N+ + E +K FS G++ S L KS GFGFV F LN+ + Q+I V +A Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG---KHISKKDRESKFEEMKANFTN----IYVKNIDLNYSEESFEKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRA 308 The following BLAST results are available for this feature:
BLAST of CV885127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885127 ID=CV885127; Name=CV885127; organism=Citrus sinensis; type=EST; length=871bpback to top |