CV885079

Overview
NameCV885079
Unique NameCV885079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885079 vs. ExPASy Swiss-Prot
Match: GUN10_ORYSJ (Endoglucanase 10 OS=Oryza sativa subsp. japonica GN=GLU2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 59/156 (37.82%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  268 KYAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRD---MGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI----SAHPKENVLIVQVGNPD--------KDHKCWERPESMTEERPLTQVNT 687
            +Y +AL  A+ FF+ Q+SG L  +N +SWRG+S +KDG     +   L  G YDAGD +KF +PMA++ T+LSW+++EY  + + + +L   ++ +KW TDYL+    S+    + ++ QVG  D         DH CW RPE +   RP+T+ ++
Sbjct:  109 QYTQALHKALMFFNAQRSGPLPKHNGVSWRGNSCMKDGLSDSTVRKSLVGGFYDAGDAIKFNYPMAWSMTMLSWSVIEYKAKYEAIGELDHVKELIKWGTDYLLKTFNSSADTIDRIVAQVGVGDTSKGGAQPNDHYCWMRPEDIDYPRPVTECHS 264          
BLAST of CV885079 vs. ExPASy Swiss-Prot
Match: GUN21_ARATH (Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 1
Query:  271 YAEALKVAMQFFDVQKSGKLVNN--KISWRGDSALKDGR-DMGL---DLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLI----SAHPKENVLIVQVGNP--------DKDHKCWERPESMTEERPLTQVNTS 690
            Y  AL+ A++FF+ Q+SGKL  N   +SWR DS L+DG+ D G    DL  G YDAGD +KF FPM++  T+LSW+++EY  +     +L+  ++ +KW TDY +    S+     V++ QVG+           DH CW RPE +  +R ++Q  +S
Sbjct:  109 YTIALRTALKFFNAQQSGKLPKNIYNVSWRHDSCLQDGKGDPGQCYKDLVGGYYDAGDSIKFNFPMSYAMTMLSWSVIEYSAKYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQVGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQCYSS 266          
The following BLAST results are available for this feature:
BLAST of CV885079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GUN10_ORYSJ2.337e-2437.82Endoglucanase 10 OS=Oryza sativa subsp. japonica G... [more]
GUN21_ARATH3.986e-2439.24Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012E03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885079 ID=CV885079; Name=CV885079; organism=Citrus sinensis; type=EST; length=713bp
CGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTCTCTTCAC
CCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGACGGCATT
GTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGGATGGTTC
TTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTTACACTAT
TAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTCCCGGTCCCC
CCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGCAATGCAG
TTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAAGATATCATG
GAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTGGATCTCA
CAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTTTCCGATG
GCTTTTACTGCGACTGTGTTGTCGTGGGCCATCCTTGAGTATGGAGATCA
GATGGACGTTGTGGATCAGTTGCAACCAGCTCAGGATTCTCTCAAGTGGA
TCACTGATTATCTTATCAGTGCTCATCCCAAAGAGAATGTCCTTATTGTT
CAGGTGGGCAATCCTGATAAGGACCACAAATGTTGGGAAAGACCTGAAAG
CATGACTGAAGAGAGACCACTCACTCAGGTCAACACATCCTTTCCTGGAA
CAGAGGTTGCAGC
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