CV885065

Overview
NameCV885065
Unique NameCV885065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7804 contig Csv1_Contig7804:173..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.484e-40
Identity = 86/223 (38.57%), Postives = 134/223 (60.09%), Query Frame = 1
Query:   64 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDV 726
            M+ SK   ES   +   F S      +P++T+ +  +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KLM   + KN +D  EYP T EL+NRCVNIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+
Sbjct:    1 MLYSKENKES--YLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDI 219          
BLAST of CV885065 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.225e-39
Identity = 83/206 (40.29%), Postives = 129/206 (62.62%), Query Frame = 1
Query:  115 FASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDV 726
            F S      LP   M + S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE +++M   + KN +D  EYP T +L++ CVN++A L+N  +++SE  +G  TVGSSEA ML G+A K +W++     G      KP++V  +  QVCWEKF  Y+++EL+EV +SE +  ++    ++ VDE TI +  ILG T  G+F+D+
Sbjct:   14 FGSFESGQDLPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDI 217          
The following BLAST results are available for this feature:
BLAST of CV885065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO4.484e-4038.57Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO2.225e-3940.29Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885065 ID=CV885065; Name=CV885065; organism=Citrus sinensis; type=EST; length=761bp
CTCTCTGACACCAAAAGAAAAAAACAATCATTATTAAATTTTGTTTGTTT
TAATATTTCAATCATGGTTCTTTCAAAGACATTTTCCGAATCCGATGAGT
CAATTCACTCCACCTTTGCCTCTCGCTACGTCCGAAACTCTCTTCCTCGG
TTCACGATGCCGGAGAACTCGATACCGAAGGAGGCGGCGTACCAGATCAT
AAACGACGAGCTGATGCTCGACGGGAATCCAAGATTGAACTTGGCTTCCT
TCGTCACAACGTGGATGGAGCCTGAATGTGACAAGCTTATGATGGCTGCC
ATTAACAAGAACTACGTTGACATGGATGAGTATCCTGTCACCACCGAGCT
TCAGAATCGATGTGTGAACATCATTGCCCGACTGTTCAATGCTCCACTGG
AGGACTCCGAGACGGCTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCC
ATAATGTTGGCCGGCCTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAA
GGCTGAAGGAAAGCCCTTTGACAAACCCAACATTGTCACTGGAGCGAACG
TTCAGGTCTGCTGGGAGAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAG
GAAGTGAAGCTGTCGGAAGGCTACTATGTGATGGACCCAGTCAAAGCTGT
AGAAATGGTGGATGAAAACACTATCTGTGTTGCTGCTATTCTGGGTTCTA
CTCTTAATGGAGAATTTGAAGATGTCAAGCTCTTTGAACGACCTTTTGGC
AGAGAAGAACA
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