CV885062

Overview
NameCV885062
Unique NameCV885062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885062_ssr370 microsatellite CV885062_ssr370:370..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: PRKC_BACSU (Serine/threonine-protein kinase prkC OS=Bacillus subtilis GN=prkC PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -3
Query:  666 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVD 911
            IVHRD++P+NIL+ H     V DFG+A       +     V+G+  YL+PE A+ G  T+K+D+Y+ G+VL EL+TGR   D
Sbjct:  130 IVHRDIKPHNILIDHMGNIKVTDFGIATALSSTTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGRIPFD 211          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.561e-11
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  666 IVHRDMRPNNILLTHDFEPLVGDFGLAR--WQXDGDMGVE----TRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVD 911
            + H D++P+NILL  D    V DFGLA+  ++ D +  +       V GT GY APEY   GQ + + DVYSFG++L+E+ +G+K  D
Sbjct:  845 VAHCDIKPSNILLDDDLTAHVSDFGLAQLLYKYDRESFLNQFSSAGVRGTIGYAAPEYGMGGQPSIQGDVYSFGILLLEMFSGKKPTD 932          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: ACCR1_ARATH (Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.561e-11
Identity = 43/151 (28.48%), Postives = 72/151 (47.68%), Query Frame = -3
Query:  459 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 911
            I+H D++ +N+LL  ++   V DFGL     + ++ +                       K DVY FGVVL+E++TGRK  D +    +  + EW  P++ E     +VD  +    +   +  +   A LC+R DP+ +P MS++   LE
Sbjct:  641 IIHGDVKSSNVLLDSEWVARVADFGLVTSSNEKNLDI-----------------------KRDVYDFGVVLLEILTGRKRYDRDCDPPE--IVEWTVPVIREGKAAAIVDTYIALPRNVEPLLKLADVAELCVREDPNQQPTMSELANWLE 766          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: P2C31_ARATH (Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 54/169 (31.95%), Postives = 75/169 (44.38%), Query Frame = -3
Query:  459 IVHRDMRPNNILLTHDFEPLVGDFGLAR------------WQXDGDMGV---ETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSE---HEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 911
            IVHRD++P N+LL   F P + DFGLA             W+  G       +  ++GT  Y+APE  +    TEKAD+YSFG+++ EL+TG       R +  Q  T       E+     +V   L    +E   H    +L     C   DP  RP    V+  LE
Sbjct:  145 IVHRDVKPANVLLDEKFFPYLADFGLAEYKKNLREVNLQNWRSSGKPTGGFHKKNMVGTLIYMAPEILRKDMYTEKADIYSFGILINELLTGVVPYTDRRAEA-QAHTVLEMNYTEQQLTVAIVSSGLRPALAEIGLHLPKSLLSLIQNCWESDPSKRPSSDNVVLELE 312          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y9871_DICDI (Probable serine/threonine-protein kinase DDB_G0271682 OS=Dictyostelium discoideum GN=DDB_G0271682 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 45/147 (30.61%), Postives = 63/147 (42.86%), Query Frame = -3
Query:  471 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVL 911
            I+HRD++  N+L+ ++F   V DFGL+R+   G         GT  ++APE       T K DVYSFG+VL E++T +      +P G    T    P L         D                     C  R+P  RP  SQ+L
Sbjct:  480 IIHRDLKSLNLLVDNNFNVKVSDFGLSRFISGGIGSSAKTFCGTLSWIAPEVFNGSGYTTKVDVYSFGIVLWEILTHK------QPSGNISATSLGHPELPSNCPQSFSD-----------------LIKECCNRNPDQRPNFSQIL 603          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = -3
Query:  594 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGV------ETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAID 911
            I H D++P+N+LL  D    V DFGLAR     D            V GT GY APEY   GQ +   DVYSFG++L+E+ TG++  +     G   L  + +  L E  +D
Sbjct:  835 IAHCDLKPSNVLLDDDLTAHVSDFGLARLLLKFDEESFFNQLSSAGVRGTIGYAAPEYGVGGQPSINGDVYSFGILLLEMFTGKRPTN-ELFGGNFTLNSYTKSALPERILD 945          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: PKN5_MYXXA (Serine/threonine-protein kinase pkn5 OS=Myxococcus xanthus GN=pkn5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  654 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVET-RVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRP 911
            +VHRD++P+NI++  D +  + DFGLA++  D     E  +++GT+ Y+APE      +  +AD+YS GV+L EL++GR   D   P
Sbjct:  240 LVHRDLKPSNIMVDDDRQVRLMDFGLAKFLADDAAITEAGKLVGTYRYMAPEQILGEPLDGRADLYSLGVILYELLSGRPPFDAKTP 326          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: PK1_STRTO (Serine/threonine-protein kinase PK-1 OS=Streptomyces toyocaensis GN=spk1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = -3
Query:  654 VHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRP 908
            VHRDM+P N+L+  D    V DFGL R   D        V+GT  YLAPE  + G    + DVY+ G++L E++TG K  D + P
Sbjct:  138 VHRDMKPENVLIGDDGRVKVADFGLVR-AVDSVTNTTGTVLGTVSYLAPEQIEHGTADPRVDVYACGILLYEMLTGEKPHDGDSP 221          
The following BLAST results are available for this feature:
BLAST of CV885062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
PRKC_BACSU9.154e-1243.90Serine/threonine-protein kinase prkC OS=Bacillus s... [more]
EFR_ARATH1.561e-1142.05LRR receptor-like serine/threonine-protein kinase ... [more]
ACCR1_ARATH1.561e-1128.48Serine/threonine-protein kinase-like protein CCR1 ... [more]
P2C31_ARATH2.039e-1131.95Protein kinase and PP2C-like domain-containing pro... [more]
Y9871_DICDI4.543e-1130.61Probable serine/threonine-protein kinase DDB_G0271... [more]
Y3475_ARATH4.543e-1137.50Probable LRR receptor-like serine/threonine-protei... [more]
PKN5_MYXXA4.543e-1139.08Serine/threonine-protein kinase pkn5 OS=Myxococcus... [more]
PK1_STRTO4.543e-1142.35Serine/threonine-protein kinase PK-1 OS=Streptomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885062 ID=CV885062; Name=CV885062; organism=Citrus sinensis; type=EST; length=928bp
ATACTCTCAGCTTCCTCCATTTTTTCGAAAGAATTACAAAAGCTTAACTT
TGCCTACTTTCCCTACCACTATACATGAGCAAAATATAGATGGACATTGG
GGAAAAAATAGAAAGAACCTAGAACTGGGTAAAAGGGAAAAAGGGGATTA
CAAAAGGACCAAAATACGTATTTAGCAGAATACTAGTTGATATGAAATAC
TAGTTGATATGAAAGGTAAGCTCTTTACAGATCATTTTCGCGGGAGGTCC
TTCTGGCCTTATCCCTTTCCCAAAAGGCTGCCTTTAGTGAATCAAGGGGG
AGCTTCCTACCGAATCCTTCCAAAGCCTCATTCATCAAGGGACCGCTATA
AGGTAGTTGCTGTTGCTGATGCTGCTGCTGCTCTACCCAGATCCGTCCAC
TCCGGCTGCCAACATCATACCCAGGTGTTGACATGTAAGTGTCTATGACC
GTGTCACCTTCCAATATGCGAAGCACCTGTGACATGCGGGGCCTGGAATG
AGGATCGCGCCTTATACACAAAGATGCAGCATGAAGCATGCAATATACTT
CATGTTCAGAATAGTGATTCCCTAGCCTTGGGTCAACCAGTTCATCTATA
GCATATTCTTCAAGAAGCGGACGTGCCCATTCGGTAAGACACTGTTGGCC
CTTTGGTCGGTTGAGGTCCACTGCTTTTCGTCCGGTAACAAGCTCAACTA
ATACCACACCAAATGAATAGACATCAGCTTTTTCAGTAATCTGGCCACTT
TGAGCATATTCCGGCGCCAAATACCCAAATGTTCCCATTACTCTTGTTTC
CACACCCATGTCACCATCANGCTGCCACCTTGCAAGGCCAAAATCTCCAA
CCAGTGGTTCAAAATCATGGGTGAGAAGGATGTTATTTGGTCGCATGTCA
CGATGCACAATGCAGCCCACTCTGCATT
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