CV885062

Overview
NameCV885062
Unique NameCV885062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885062_ssr370 microsatellite CV885062_ssr370:370..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.132e-28
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = -3
Query:  462 VHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLL--EEYAIDELVDPRLG-NHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRIL 908
            +HRD++P+NILL  D    V DFGL R   +G   +ETR+ GTFGYLAPEYA +G++T K DVYSFGV+L+EL+TGRK++D ++P+    L  W + +   +E +  + +D  +  +  +   V+ +   A  C  R+P+ RP M   + IL
Sbjct:  714 IHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSWFKRMYINKEASFKKAIDTTIDLDEETLASVHTVAELAGHCCAREPYQRPDMGHAVNIL 865          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.132e-28
Identity = 65/169 (38.46%), Postives = 102/169 (60.36%), Query Frame = -3
Query:  405 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGS 911
            I+HRD++ +NILL  DF P + DFGLAR   +    + T + GT GY+APEY   G++TEKADVYSFGV+++E++TG++     +  G    + W+  L     ++E VDP LG+++++ E   +L    LC++     RP MS V+++++G   I T    P  + GS
Sbjct:  444 IIHRDIKLSNILLEDDFTPRIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLMIEVITGKRNNAFVQDAGSILQSVWS--LYRTSNVEEAVDPILGDNFNKIEASRLLQIGLLCVQAAFDQRPAMSVVVKMMKGSLEIHTPTQPPFLNPGS 610          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 64/173 (36.99%), Postives = 103/173 (59.54%), Query Frame = -3
Query:  396 IVHRDMRPNNILLTHDFEPLVGDFGLARWQX-DGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRSG 911
            ++HRD++ +NILL H     V DFG +++   +GD  V   V GT GYL PEY ++ Q++EK+DV+SFGVVL+E+V+GR+ +++ RP+ +  L EWA+P +    +DE+VDP +   Y    ++ ++  A  C+      RP M  ++R LE   +I+   S     + S  G
Sbjct:  717 VIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGG 889          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y1755_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.342e-28
Identity = 66/156 (42.31%), Postives = 96/156 (61.54%), Query Frame = -3
Query:  462 GC---IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQC-LTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRIL 917
            GC   IVHRD++  NILL+ +FE  + DFGL+R    G+    T V GTFGYL PEY ++  ++ K+DVYSFGVVL+E+++G+  +DL+R   + C + EW   +LE   I+ +VDP L   Y     + ++  A  C+ R    RP MSQV+ +L
Sbjct:  675 GCKPKIVHRDVKSTNILLSEEFEAKIADFGLSRSFLIGNEAQPTVVAGTFGYLDPEYHKTSLLSMKSDVYSFGVVLLEIISGQDVIDLSR---ENCNIVEWTSFILENGDIESIVDPNLHQDYDTSSAWKVVELAMSCVNRTSKERPNMSQVVHVL 827          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.342e-28
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = -3
Query:  399 IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRS 911
            I+HRD++ +NILL  D  P + DFG+AR +  D      +R++GT+GY+APEYA  GQ + K+DVYSFGV+++E+++GRK        G Q L   A  L       +LVDP +  +    EV   +H   LC++ DP  RP +S V  +L  +TV       PG+ +  R+
Sbjct:  472 IIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGRKNSSFGESDGAQDLLTHAWRLWTNKKALDLVDPLIAENCQNSEVVRCIHIGLLCVQEDPAKRPAISTVFMMLTSNTVTLPVPRQPGFFIQCRA 643          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.112e-28
Identity = 65/151 (43.05%), Postives = 95/151 (62.91%), Query Frame = -3
Query:  462 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEY-AIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRIL 911
            IVHR+ +  NILL  +  P + D GLA    + +  V T+V+G+FGY APE+A SG  T K+DVY+FGVV++EL+TGRK +D +R + +Q L  WA P L +  A+ ++VDP L   Y    +       +LCI+ +P  RP MS+V++ L
Sbjct:  519 IVHRNFKSANILLDEELNPHLSDSGLAALTPNTERQVSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQQL 669          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.554e-27
Identity = 64/153 (41.83%), Postives = 96/153 (62.75%), Query Frame = -3
Query:  459 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGD-MGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLL-EEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 911
            +++RD +  NILL  DF   + DFGLA+    GD   V T+V+GT GY APEY  +G++T K+DVYSFGVVL+EL++GR+A+D +    +  L +WA P L ++  +  ++D +LG  Y +   +   + A  C+  D   RP+MS+VL  LE
Sbjct:  215 VIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDWATPYLGDKRKLFRIMDTKLGGQYPQKGAFTAANLALQCLNPDAKLRPKMSEVLVTLE 367          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.030e-27
Identity = 66/171 (38.60%), Postives = 94/171 (54.97%), Query Frame = -3
Query:  399 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRS 911
            ++HRD++P+N+L+     P +GDFGLAR    G +   T ++GT GY+APE +++G  +  +DV++FGV+L+E+V GRK  D     G   L +W   L     I   +DPRLG+ Y   E    L    LC  + P SRP M  VLR L G+  +       GY   SRS
Sbjct:  490 VIHRDVKPSNVLIDSKMNPRLGDFGLARLYERGTLSETTALVGTIGYMAPELSRNGNPSSASDVFAFGVLLLEIVCGRKPTD----SGTFFLVDWVMELHANGEILSAIDPRLGSGYDGGEARLALAVGLLCCHQKPASRPSMRIVLRYLNGEENVPEIDDEWGYSKSSRS 656          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.651e-27
Identity = 66/172 (38.37%), Postives = 102/172 (59.30%), Query Frame = -3
Query:  402 IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQ-QCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSR 911
            I+HRD++  NILL  D  P V DFG+AR +  D       RV+GT+GY+APEYA  G+ + K+DVYSFGV+++E+V+G K   L++  G    L  +   L    +  ELVDP  G++Y   E+   +H A LC++ D + RP MS ++++L   ++       PG+ + S+
Sbjct:  465 IIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGKFSMKSDVYSFGVLVLEIVSGMKNSSLDQMDGSISNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDANDRPTMSAIVQMLTTSSIALAVPRPPGFFLRSK 636          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.522e-27
Identity = 63/173 (36.42%), Postives = 102/173 (58.96%), Query Frame = -3
Query:  396 IVHRDMRPNNILLTHDFEPLVGDFGLARWQX-DGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRSG 911
            ++HRD++ +NILL       V DFG +++   +GD  V   V GT GYL PEY ++ Q++EK+DV+SFGVVL+E+V+GR+ +++ RP+ +  L EWA+P +    +DE+VDP +   Y    ++ ++  A  C+      RP M  ++R LE   +I+   S     + S  G
Sbjct:  718 VIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGG 890          
The following BLAST results are available for this feature:
BLAST of CV885062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
TMK1_ARATH3.132e-2841.45Probable receptor protein kinase TMK1 OS=Arabidops... [more]
CRK3_ARATH3.132e-2838.46Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
NORK_PEA4.090e-2836.99Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
Y1755_ARATH5.342e-2842.31Probable LRR receptor-like serine/threonine-protei... [more]
CRK6_ARATH5.342e-2838.37Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
SRF8_ARATH9.112e-2843.05Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
APK2A_ARATH1.554e-2741.83Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
LRKA1_ARATH2.030e-2738.60Lectin-domain containing receptor kinase A4.1 OS=A... [more]
CRK20_ARATH2.651e-2738.37Putative cysteine-rich receptor-like protein kinas... [more]
NORK_MEDTR4.522e-2736.42Nodulation receptor kinase OS=Medicago truncatula ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885062 ID=CV885062; Name=CV885062; organism=Citrus sinensis; type=EST; length=928bp
ATACTCTCAGCTTCCTCCATTTTTTCGAAAGAATTACAAAAGCTTAACTT
TGCCTACTTTCCCTACCACTATACATGAGCAAAATATAGATGGACATTGG
GGAAAAAATAGAAAGAACCTAGAACTGGGTAAAAGGGAAAAAGGGGATTA
CAAAAGGACCAAAATACGTATTTAGCAGAATACTAGTTGATATGAAATAC
TAGTTGATATGAAAGGTAAGCTCTTTACAGATCATTTTCGCGGGAGGTCC
TTCTGGCCTTATCCCTTTCCCAAAAGGCTGCCTTTAGTGAATCAAGGGGG
AGCTTCCTACCGAATCCTTCCAAAGCCTCATTCATCAAGGGACCGCTATA
AGGTAGTTGCTGTTGCTGATGCTGCTGCTGCTCTACCCAGATCCGTCCAC
TCCGGCTGCCAACATCATACCCAGGTGTTGACATGTAAGTGTCTATGACC
GTGTCACCTTCCAATATGCGAAGCACCTGTGACATGCGGGGCCTGGAATG
AGGATCGCGCCTTATACACAAAGATGCAGCATGAAGCATGCAATATACTT
CATGTTCAGAATAGTGATTCCCTAGCCTTGGGTCAACCAGTTCATCTATA
GCATATTCTTCAAGAAGCGGACGTGCCCATTCGGTAAGACACTGTTGGCC
CTTTGGTCGGTTGAGGTCCACTGCTTTTCGTCCGGTAACAAGCTCAACTA
ATACCACACCAAATGAATAGACATCAGCTTTTTCAGTAATCTGGCCACTT
TGAGCATATTCCGGCGCCAAATACCCAAATGTTCCCATTACTCTTGTTTC
CACACCCATGTCACCATCANGCTGCCACCTTGCAAGGCCAAAATCTCCAA
CCAGTGGTTCAAAATCATGGGTGAGAAGGATGTTATTTGGTCGCATGTCA
CGATGCACAATGCAGCCCACTCTGCATT
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