CV885062

Overview
NameCV885062
Unique NameCV885062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885062_ssr370 microsatellite CV885062_ssr370:370..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.931e-26
Identity = 64/153 (41.83%), Postives = 94/153 (61.44%), Query Frame = -3
Query:  453 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGD 911
            I+HRD++ +NILL   FE  V DFGLA++  +G   + TRV GT GY+APEYA  GQ+TEK+DVYSFGVVL+EL++ RKA+  +       + +WA  L+ E    ++V+  +        +   +  A LC     H+RP M QV+++LE +
Sbjct:  408 IIHRDIKASNILLDERFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTEKSDVYSFGVVLLELLSRRKAIVTDEEGQPVSVADWAWSLVREGQTLDVVEDGMPEKGPPEVLEKYVLIAVLCSHPQLHARPTMDQVVKMLESN 560          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.931e-26
Identity = 63/167 (37.72%), Postives = 96/167 (57.49%), Query Frame = -3
Query:  417 IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDL-NRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGY 911
            I+HRD++  NILL  D  P V DFG+AR +  D       RV+GT+GY+APEYA  GQ + K+DVYSFGV++ E+++G K   L         L  +   L    +  +LVDP  G++Y  H++   +H A LC++ D   RP MS ++++L   +++      PG+
Sbjct:  629 IIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGQFSMKSDVYSFGVLVFEIISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVDPSFGDNYQTHDITRCIHIALLCVQEDVDDRPNMSAIVQMLTTSSIVLAVPKQPGF 795          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK24_ARATH (Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana GN=CRK24 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.828e-26
Identity = 62/167 (37.13%), Postives = 94/167 (56.29%), Query Frame = -3
Query:  417 IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQ-QCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGY 911
            I+HRD++  NILL  D  P + DFG+AR ++ D       RV+GT GY+ PEY  +GQ + K+DVYSFGV+++E++ G+K   +N   G    L  +   L     + ELVD  +G +Y  +EV   +H   LC++ +P  RP MS V  +L   ++       PG+
Sbjct:  433 IIHRDLKAGNILLDADMNPKIVDFGVARNFRVDQTEATTARVVGTIGYMPPEYVTNGQFSTKSDVYSFGVLILEIIGGKKNSSINETDGSISNLVTYVWRLWNNEPLLELVDAPMGENYDRNEVIRCIHIGLLCVQENPADRPTMSTVFHMLTNTSITLHVPQPPGF 599          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK19_ARATH (Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 62/167 (37.13%), Postives = 96/167 (57.49%), Query Frame = -3
Query:  417 IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDL-NRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGY 911
            I+HRD++  NILL  D  P + DFG+AR +  D    +  RV+GT+GY++PEYA  GQ + K+DVYSFGV+++E+++G K   L    +    L  +   L    +  ELVDP  G++Y   E+   +H A LC++ D   RP MS ++++L    +       PG+
Sbjct:  447 IIHRDLKAGNILLDDDMNPKIADFGMARIFGMDQTEAMTRRVVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEIISGMKNSSLYQMDESVGNLVTYTWRLWSNGSPSELVDPSFGDNYQTSEITRCIHIALLCVQEDAEDRPTMSSIVQMLTTSLIALAEPRPPGF 613          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.529e-26
Identity = 68/177 (38.42%), Postives = 97/177 (54.80%), Query Frame = -3
Query:  399 GC---IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRS 917
            GC   +VHRD++  NILL   F+  + DFGL+R +   G+  V T V GT GYL PEY ++ ++ EK+DVYSFG+VL+E++T R  +   R K    +  W   +L +  I+ +VDPRL   Y    V+  L  A  C+      RP MSQV   L+    ++        D+GSRS
Sbjct:  689 GCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGETHVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQTREKPH--IAAWVGYMLTKGDIENVVDPRLNRDYEPTSVWKALEIAMSCVNPSSEKRPTMSQVTNELKQCLTLENSKRGVREDMGSRS 863          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.529e-26
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = -3
Query:  420 VHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPG 908
            VHRD++  NILL  D  P + DFGLAR   +    + T+V GT GY+APEYA  G +T KADVYSFGV+++E+V G    +        CL E+A   +E   + ++VD RL       E   ++  A +C    P  RP MS+V+ +LEG  +     STPG
Sbjct:  804 VHRDIKATNILLDKDLTPKISDFGLARLDEEEKTHISTKVAGTIGYMAPEYALWGYLTFKADVYSFGVLVLEIVAGITNSNFMGAGDSVCLLEFANECVESGHLMQVVDERLRPEVDRKEAEAVIKVALVCSSASPTDRPLMSEVVAMLEG--LYPVPESTPG 964          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.529e-26
Identity = 63/151 (41.72%), Postives = 93/151 (61.59%), Query Frame = -3
Query:  462 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETR-VMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRIL 911
            IVHRD++ NNIL+  DFEP +GDFGLA+   DGD    +  + G++GY+APEY  S +ITEK+DVYS+GVV++E++TG++ +D   P G   + +W + + +   ID+ +  R  +     E+   L  A LCI   P  RP M  V  +L
Sbjct:  916 IVHRDIKANNILIGPDFEPYIGDFGLAKLVDDGDFARSSNTIAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGLH-IVDWVKKIRDIQVIDQGLQARPESEV--EEMMQTLGVALLCINPIPEDRPTMKDVAAML 1063          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.114e-25
Identity = 61/155 (39.35%), Postives = 95/155 (61.29%), Query Frame = -3
Query:  447 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTV 911
            I+HRD++ +NILL  + E  V DFGLA+   D +  + T V GTFGYLAPEY QSG+ TEK DVYSFGV+++E+++G++  D +  +    +  W + L+ E    ++VDP       E  +  +L  A+ C+   P  RP M +V+++LE + +
Sbjct:  425 IIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNVVGWLKFLISEKRPRDIVDPNCEGMQME-SLDALLSIATQCVSPSPEERPTMHRVVQLLESEVM 578          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK18_ARATH (Cysteine-rich receptor-like protein kinase 18 OS=Arabidopsis thaliana GN=CRK18 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.114e-25
Identity = 60/167 (35.93%), Postives = 98/167 (58.68%), Query Frame = -3
Query:  417 IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKG-QQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGY 911
            I+HRD++ +NILL  D  P + DFG+AR +  D  +    RV+GTFGY++PEY   GQ + K+DVYSFGV+++E+++G+K     +  G    L  +   L E  ++ EL+DP +   ++  EV   +H   LC++ +P  RP MS + ++L   ++       PG+
Sbjct:  460 IIHRDLKASNILLDADMNPKIADFGMARIFGVDQTVANTGRVVGTFGYMSPEYVTHGQFSMKSDVYSFGVLILEIISGKKNSSFYQMDGLVNNLVTYVWKLWENKSLHELLDPFINQDFTSEEVIRYIHIGLLCVQENPADRPTMSTIHQMLTNSSITLPVPLPPGF 626          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.455e-25
Identity = 66/155 (42.58%), Postives = 100/155 (64.52%), Query Frame = -3
Query:  459 IVHRDMRPNNILLTHDFEPLVGDFGLARW-QXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLE-EYAIDELVDPRLGNHYS--EHEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 911
            IVHRD++P+NILL  DFE  V DFG+A+  Q D  M V   V G++GY+APEYA + Q+ +K+D+YS+GV+L+E++TG+++V+    +G   + +W R  L+ +  ++E++D  +G   S    E+  ML  A LC  R P  RP M  VL IL+
Sbjct:  848 IVHRDLKPSNILLDADFEARVADFGVAKLIQTDESMSV---VAGSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVEPEFGEGNS-IVDWVRSKLKTKEDVEEVLDKSMGRSCSLIREEMKQMLRIALLCTSRSPTDRPPMRDVLLILQ 998          
The following BLAST results are available for this feature:
BLAST of CV885062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RKF3_ARATH2.931e-2641.83Probable LRR receptor-like serine/threonine-protei... [more]
CRK23_ARATH2.931e-2637.72Putative cysteine-rich receptor-like protein kinas... [more]
CRK24_ARATH3.828e-2637.13Cysteine-rich receptor-like protein kinase 24 OS=A... [more]
CRK19_ARATH5.000e-2637.13Cysteine-rich receptor-like protein kinase 19 OS=A... [more]
Y2289_ARATH8.529e-2638.42Probable LRR receptor-like serine/threonine-protei... [more]
RKF1_ARATH8.529e-2640.49Probable LRR receptor-like serine/threonine-protei... [more]
RCH1_ARATH8.529e-2641.72LRR receptor-like serine/threonine-protein kinase ... [more]
FEI1_ARATH1.114e-2539.35LRR receptor-like serine/threonine-protein kinase ... [more]
CRK18_ARATH1.114e-2535.93Cysteine-rich receptor-like protein kinase 18 OS=A... [more]
Y5148_ARATH1.455e-2542.58Probable leucine-rich repeat receptor-like protein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885062 ID=CV885062; Name=CV885062; organism=Citrus sinensis; type=EST; length=928bp
ATACTCTCAGCTTCCTCCATTTTTTCGAAAGAATTACAAAAGCTTAACTT
TGCCTACTTTCCCTACCACTATACATGAGCAAAATATAGATGGACATTGG
GGAAAAAATAGAAAGAACCTAGAACTGGGTAAAAGGGAAAAAGGGGATTA
CAAAAGGACCAAAATACGTATTTAGCAGAATACTAGTTGATATGAAATAC
TAGTTGATATGAAAGGTAAGCTCTTTACAGATCATTTTCGCGGGAGGTCC
TTCTGGCCTTATCCCTTTCCCAAAAGGCTGCCTTTAGTGAATCAAGGGGG
AGCTTCCTACCGAATCCTTCCAAAGCCTCATTCATCAAGGGACCGCTATA
AGGTAGTTGCTGTTGCTGATGCTGCTGCTGCTCTACCCAGATCCGTCCAC
TCCGGCTGCCAACATCATACCCAGGTGTTGACATGTAAGTGTCTATGACC
GTGTCACCTTCCAATATGCGAAGCACCTGTGACATGCGGGGCCTGGAATG
AGGATCGCGCCTTATACACAAAGATGCAGCATGAAGCATGCAATATACTT
CATGTTCAGAATAGTGATTCCCTAGCCTTGGGTCAACCAGTTCATCTATA
GCATATTCTTCAAGAAGCGGACGTGCCCATTCGGTAAGACACTGTTGGCC
CTTTGGTCGGTTGAGGTCCACTGCTTTTCGTCCGGTAACAAGCTCAACTA
ATACCACACCAAATGAATAGACATCAGCTTTTTCAGTAATCTGGCCACTT
TGAGCATATTCCGGCGCCAAATACCCAAATGTTCCCATTACTCTTGTTTC
CACACCCATGTCACCATCANGCTGCCACCTTGCAAGGCCAAAATCTCCAA
CCAGTGGTTCAAAATCATGGGTGAGAAGGATGTTATTTGGTCGCATGTCA
CGATGCACAATGCAGCCCACTCTGCATT
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