CV885062

Overview
NameCV885062
Unique NameCV885062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885062_ssr370 microsatellite CV885062_ssr370:370..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.608e-24
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = -3
Query:  471 GC---IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVL 917
            GC   +VHRD++  NILL   FE  + DFGL+R +  +G+  V T V GT GYL PEY ++  +TEK+DVYSFG++L+E++T R  +D +R K    + EW   +L +  I  ++DP L   Y    V+  +  A  C+      RP MSQV+
Sbjct:  694 GCKPPMVHRDVKTTNILLNEHFEAKLADFGLSRSFLIEGETHVSTVVAGTPGYLDPEYHRTNWLTEKSDVYSFGILLLEIITNRHVIDQSREKPH--IGEWVGVMLTKGDIQSIMDPSLNEDYDSGSVWKAVELAMSCLNHSSARRPTMSQVV 844          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 60/154 (38.96%), Postives = 92/154 (59.74%), Query Frame = -3
Query:  459 IVHRDMRPNNILLTHDFEPLVGDFGLARW--QXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEY-AIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 911
            +VH++++ +NILL ++  P + D+GLA +  +   ++GV        GY APE       T+K+DVYSFGVV++EL+TGRK  D  RPK +Q L  WA+P L++   +DE+VDP L   Y+   V       S+C+  +P  RP +S V+  L+
Sbjct:  539 LVHKNIKSSNILLDNELNPRLSDYGLANFHHRTSQNLGV--------GYNAPECTDPSAYTQKSDVYSFGVVMLELLTGRKPYDSGRPKAEQSLVRWAKPQLKDMDTLDEMVDPALCGLYAPESVSSFADIVSICVMTEPGLRPPVSNVVEALK 684          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: CRK37_ARATH (Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 64/170 (37.65%), Postives = 101/170 (59.41%), Query Frame = -3
Query:  423 IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQ----CLTEWARPLLEEYAIDELVDPRL--GNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTP 911
            I+HRD++ +NILL  +  P V DFG+AR +  D   G  +RV+GT+GY+APEYA  GQ + K+DVYSFGV+L+E+++G+    L + + ++        W R +   +A  E++DP     N+ S +EV  ++H   LC++ D   RP ++ +L  LE    I   + TP
Sbjct:  466 IIHRDLKASNILLDAEMNPKVADFGMARLFDMDETRGQTSRVVGTYGYMAPEYATYGQFSTKSDVYSFGVMLLEMISGKSNKKLEKEEEEEEEELPAFVWKRWIEGRFA--EIIDPLAAPSNNISINEVMKLIHIGLLCVQEDISKRPSINSILFWLERHATITMPVPTP 633          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.744e-24
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = -3
Query:  459 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMG-VETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 911
            I+HRD++  NILL  +F   V DFGL++   D D   V T V G+FGYL PEY    Q+TEK+DVYSFGVV++E+V GR  +D + P+ +  L EWA  L+++  +++++DP L       EV         C+ ++   RP M  +L  LE
Sbjct:  608 IIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPFLVGKVKLEEVKKYCEVTEKCLSQNGIERPAMGDLLWNLE 759          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.744e-24
Identity = 63/156 (40.38%), Postives = 94/156 (60.26%), Query Frame = -3
Query:  447 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHE-VYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTV 911
            I+HRD++ +NILL  + E  V DFGLA+   D +  + T V GTFGYLAPEY QSG+ TEK DVYSFGV+++E+++G+   D +  +    +  W   L+ E    E+VD  L     E E +  +L  A+ C+   P  RP M +V+++LE + +
Sbjct:  423 IIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKLPTDASFIEKGFNIVGWLNFLISENRAKEIVD--LSCEGVERESLDALLSIATKCVSSSPDERPTMHRVVQLLESEVM 576          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 62/153 (40.52%), Postives = 91/153 (59.48%), Query Frame = -3
Query:  471 GC---IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVL 917
            GC   +VHRD++  NILL   F+  + DFGL+R +  +G+  V T V GT GYL PEY ++  +TEK+DVYSFGVVL+ ++T +  +D NR K  + + EW   +L +  I  + DP L   Y+   V+  +  A  C+     +RP MSQV+
Sbjct:  693 GCKPLMVHRDVKTTNILLNEHFDTKLADFGLSRSFPIEGETHVSTVVAGTIGYLDPEYYRTNWLTEKSDVYSFGVVLLVMITNQPVIDQNREK--RHIAEWVGGMLTKGDIKSITDPNLLGDYNSGSVWKAVELAMSCMNPSSMTRPTMSQVV 843          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 64/178 (35.96%), Postives = 98/178 (55.06%), Query Frame = -3
Query:  399 VGC---IVHRDMRPNNILLTHDFEPLVGDFGLAR-WQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTPGYDVGSRS 920
            +GC   ++HRD++  NILL ++F+  +GDFGL+R +    +  V T V G+ GYL PEY ++  +TEK+DV+SFGVVL+E++T +  +D  R K    + EW    L    I  +VDP +   Y    ++  L  A  C+      RP MSQV   L+   + +       +DV S+S
Sbjct:  706 IGCKPPMIHRDIKSMNILLDNNFQAKLGDFGLSRSFPVGSETHVSTNVAGSPGYLDPEYYRTNWLTEKSDVFSFGVVLLEIITSQPVIDQTREKSH--IGEWVGFKLTNGDIKNIVDPSMNGDYDSSSLWKALELAMSCVSPSSSGRPNMSQVANELQECLLTENSRKGGRHDVDSKS 881          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.680e-24
Identity = 63/158 (39.87%), Postives = 90/158 (56.96%), Query Frame = -3
Query:  459 VGC---IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMG-VETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILE 920
            +GC   IVHRD++ +NILL    +  + DFGL+R    GD   V T V GTFGYL  EY Q+ +++EK+DVYSFGVVL+E++T +  +D NR      + EW + +L    I  ++DP+L   Y     +  L  A  C+      RP MS V+  L+
Sbjct:  682 IGCKPLIVHRDVKSSNILLDDQLQAKLADFGLSRSFPIGDESHVSTLVAGTFGYLDHEYYQTNRLSEKSDVYSFGVVLLEIITNKPVIDHNRDMPH--IAEWVKLMLTRGDISNIMDPKLQGVYDSGSAWKALELAMTCVNPSSLKRPNMSHVVHELK 837          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.112e-24
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = -3
Query:  471 GC---IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIDELVDPRLGNHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVL 917
            GC   I+HRD++ +NILL  +    V DFGL+R   +    V +   GT GYL PEY  S Q+TEK+DVYSFGVVL EL++G+K V       +  +  WAR L+ +  +  ++DP + ++     V+ +   A+ C+ +  H+RPRM +V+
Sbjct:  722 GCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLTHVSSVAKGTVGYLDPEYYASQQLTEKSDVYSFGVVLFELLSGKKPVSAEDFGPELNIVHWARSLIRKGDVCGIIDPCIASNVKIESVWRVAEVANQCVEQRGHNRPRMQEVI 873          
BLAST of CV885062 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.112e-24
Identity = 68/171 (39.77%), Postives = 96/171 (56.14%), Query Frame = -3
Query:  423 IVHRDMRPNNILLTHDFEPLVGDFGLARWQXDGDMGVETRVMGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQ--CLTEWARPLLEEYAIDELVDPRL----GNHYSEHE--VYCMLHAASLCIRRDPHSRPRMSQVLRILEGDTVIDTYMSTP 911
            I HRD++  NILL  D    V DFGLA+   +G+  + TRV GT GYLAPEYA  GQ+TEK+DVYSFGVV++E++ GRKA+DL+         +T+WA  L++    +E ++  L    G+  S  +  +   L    LC       RP +   L++LEGD  +      P
Sbjct:  422 IYHRDIKGTNILLDVDMRARVADFGLAKQSREGESHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIMCGRKALDLSTSGSPNTFLITDWAWSLVKAGKTEEALEQSLLREEGSGLSNPKGIMERFLQVGILCAHVLVALRPTILDALKMLEGDIEVPPIPDRP 592          
The following BLAST results are available for this feature:
BLAST of CV885062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
Y5182_ARATH1.608e-2440.52Probable LRR receptor-like serine/threonine-protei... [more]
SRF4_ARATH2.101e-2438.96Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
CRK37_ARATH2.101e-2437.65Cysteine-rich receptor-like protein kinase 37 OS=A... [more]
Y2393_ARATH2.744e-2440.79Probable receptor-like protein kinase At2g39360 OS... [more]
FEI2_ARATH2.744e-2440.38LRR receptor-like serine/threonine-protein kinase ... [more]
Y5181_ARATH3.583e-2440.52Probable LRR receptor-like serine/threonine-protei... [more]
Y4245_ARATH3.583e-2435.96Probable LRR receptor-like serine/threonine-protei... [more]
Y1756_ARATH4.680e-2439.87Probable LRR receptor-like serine/threonine-protei... [more]
Y1677_ARATH6.112e-2438.82Probable LRR receptor-like serine/threonine-protei... [more]
Y1105_ARATH6.112e-2439.77Probable receptor-like protein kinase At1g11050 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885062 ID=CV885062; Name=CV885062; organism=Citrus sinensis; type=EST; length=928bp
ATACTCTCAGCTTCCTCCATTTTTTCGAAAGAATTACAAAAGCTTAACTT
TGCCTACTTTCCCTACCACTATACATGAGCAAAATATAGATGGACATTGG
GGAAAAAATAGAAAGAACCTAGAACTGGGTAAAAGGGAAAAAGGGGATTA
CAAAAGGACCAAAATACGTATTTAGCAGAATACTAGTTGATATGAAATAC
TAGTTGATATGAAAGGTAAGCTCTTTACAGATCATTTTCGCGGGAGGTCC
TTCTGGCCTTATCCCTTTCCCAAAAGGCTGCCTTTAGTGAATCAAGGGGG
AGCTTCCTACCGAATCCTTCCAAAGCCTCATTCATCAAGGGACCGCTATA
AGGTAGTTGCTGTTGCTGATGCTGCTGCTGCTCTACCCAGATCCGTCCAC
TCCGGCTGCCAACATCATACCCAGGTGTTGACATGTAAGTGTCTATGACC
GTGTCACCTTCCAATATGCGAAGCACCTGTGACATGCGGGGCCTGGAATG
AGGATCGCGCCTTATACACAAAGATGCAGCATGAAGCATGCAATATACTT
CATGTTCAGAATAGTGATTCCCTAGCCTTGGGTCAACCAGTTCATCTATA
GCATATTCTTCAAGAAGCGGACGTGCCCATTCGGTAAGACACTGTTGGCC
CTTTGGTCGGTTGAGGTCCACTGCTTTTCGTCCGGTAACAAGCTCAACTA
ATACCACACCAAATGAATAGACATCAGCTTTTTCAGTAATCTGGCCACTT
TGAGCATATTCCGGCGCCAAATACCCAAATGTTCCCATTACTCTTGTTTC
CACACCCATGTCACCATCANGCTGCCACCTTGCAAGGCCAAAATCTCCAA
CCAGTGGTTCAAAATCATGGGTGAGAAGGATGTTATTTGGTCGCATGTCA
CGATGCACAATGCAGCCCACTCTGCATT
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