CV885048

Overview
NameCV885048
Unique NameCV885048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:787..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_PYRFU (Elongation factor 2 OS=Pyrococcus furiosus GN=fusA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  393 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 797
            H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  592 HEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 49/139 (35.25%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  381 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 797
            H DAIHRG  QVIP  R  ++ + + A+ +LLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+P T     + +IR+RKG+K ++
Sbjct:  592 HEDAIHRGPAQVIPAVREAVHNALIDAEIKLLEPIQEVRIDVPNEHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQPET-----IDEIRERKGMKLEL 722          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = -2
Query:  393 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 797
            H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+G LR ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  592 HEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGSVSREINQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGALRGATSGKAL-------WSTEHAGFKRVPNELAVNIIRQIRQRKGL 718          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  393 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 797
            H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+G++R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  592 HEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGSIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = -2
Query:  393 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 797
            H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  592 HEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = -2
Query:  384 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGLKEQ 797
            H DA+HRG  QV+P  R+ I+ + ++A+P LLEP+  V I  P+  +G     +  +RG +    Q     +  +++ +PV E FGF+G +R+AT G+         W   ++     P      +  ++R RKGL  +
Sbjct:  592 HEDAVHRGPAQVLPAIRKGIFGAMMSAEPVLLEPIQKVFINVPQDYMGSATREIQNRRGQIVNMTQE--GDMVTVESTVPVAEMFGFAGDIRSATEGRCL-------WSTENAGFERLPNELQHTITREVRTRKGLSPE 721          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = -2
Query:  393 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 797
            H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+G +R ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  592 HEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVVINVPYEYMGSVSREMNQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGAIRGATSGRAL-------WSTEHAGFKRVPTELAINIIRQIRQRKGL 718          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  381 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 797
            H DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+      +++ +IR+RKG+K ++
Sbjct:  591 HEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQ-----REIIMEIRERKGMKTEL 721          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  381 HADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 797
            H DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+      +++ +IR+RKG+K ++
Sbjct:  591 HEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQ-----REIIMEIRERKGMKTEL 721          
BLAST of CV885048 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = -2
Query:  393 QVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRG-HVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDH--W-----DMMSSDPLEPGTQAAQL-------VADIRKRKGL 767
            Q+IP  ++  Y   LTA P LLEP+Y V+I      L  +  ++ ++RG  +++ ++  GTPL  ++  +PVIES GF   LR +T+G    Q  F H  W     D++  D   P  + A +       V   R+RKG+
Sbjct:  837 QIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELMKKRRGSRIYKTIKVAGTPLLEVRGQVPVIESAGFETDLRLSTNGLGMCQLYFWHKIWRKVPGDVLDKDAFIPKLKPAPINSLSRDFVMKTRRRKGI 976          
The following BLAST results are available for this feature:
BLAST of CV885048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_PYRFU5.931e-1435.29Elongation factor 2 OS=Pyrococcus furiosus GN=fusA... [more]
EF2_NATPD7.746e-1435.25Elongation factor 2 OS=Natronomonas pharaonis (str... [more]
EF2_THEON1.012e-1335.29Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_PYRHO1.012e-1334.56Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_PYRAB1.321e-1334.56Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_METTH1.726e-1330.22Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_THESM2.944e-1333.82Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_HALSA3.845e-1334.53Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS33.845e-1334.53Elongation factor 2 OS=Halobacterium salinarum (st... [more]
SN114_YEAST4.251e-1232.86114 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012C05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885048 ID=CV885048; Name=CV885048; organism=Citrus sinensis; type=EST; length=798bp
TAATATAATAATATATCAACCAACGTCGGCCAGAATTAGTTTAAACACAT
GACAGAACATCAAACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAG
ATGACAGAGACAGGGTTACTAAACCCAATCAACAGTAATATTACTTTACT
AAACACAATGAGGATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCA
AAAAATATTGCTGCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTAC
AGCTCGTCCTCTACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATA
TCAGCAACAAGCTGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTA
CAGCTTGTCCTCAAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCT
TCCTCTTCCTGATATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCC
AGTGGATCGGATGACATCATGTCCCAGTGATCAAACACACATTGTGGGAA
GGCCTGTCCTGACGTTGCAGCCCTCAAAGTGCCTGAGAATCCAAAGGACT
CGATGACGGGAAGGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTC
TGCATTTCCTCGAACACGTGACCACGTTTCTGATTGAGAACACTGTAAAT
ACCACCAAGGGCCTGCTCGGGAGCCTGTATTTCGACCATGTAGACAGGCT
CAAGAAGCCTGGGCTTGGCTGTGAGCTGGGAAGCATATATGACCCTCCTA
GCAGTAGGAATGACTTGACCACCACCTCTGTGAATGGCATCAGCGTGA
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