CV885047

Overview
NameCV885047
Unique NameCV885047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.876e-46
Identity = 87/193 (45.08%), Postives = 128/193 (66.32%), Query Frame = 2
Query:    5 ARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL  +RGHV ++   PG+PLY IKA++P I+SF
Sbjct:  689 AEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSF 881          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.450e-46
Identity = 87/193 (45.08%), Postives = 128/193 (66.32%), Query Frame = 2
Query:    5 ARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL  +RGHV ++   PG+PLY IKA++P I+SF
Sbjct:  689 AEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSF 881          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.450e-46
Identity = 87/193 (45.08%), Postives = 128/193 (66.32%), Query Frame = 2
Query:    5 ARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL  +RGHV ++   PG+PLY IKA++P I+SF
Sbjct:  688 AEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSF 880          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.450e-46
Identity = 87/193 (45.08%), Postives = 128/193 (66.32%), Query Frame = 2
Query:    5 ARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL  +RGHV ++   PG+PLY IKA++P I+SF
Sbjct:  689 AEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSF 881          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.450e-46
Identity = 87/193 (45.08%), Postives = 128/193 (66.32%), Query Frame = 2
Query:    5 ARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            A PLE+GLAE I++  +    + K   +    ++ WD   A+ IW FGP+ TGPN++VD     +     L  +KDS+V GFQW ++EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL  +RGHV ++   PG+PLY IKA++P I+SF
Sbjct:  689 AEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSF 881          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.756e-44
Identity = 86/192 (44.79%), Postives = 128/192 (66.67%), Query Frame = 2
Query:   11 PLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV------VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIES 568
            PLE+G++  I++G++      K  S+   + + WD   ++ IW FGP+  G N++       D+ K V  LN +K+ +  GFQW ++EG L +E +R + F + DVVL  + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVYMVE+ AP  +L  IY +L  +RGHV +++ RPG+PLY ++A +PVI+S
Sbjct:  704 PLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNV--LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDS 893          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.901e-37
Identity = 79/187 (42.25%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   11 PLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            PL+E     I DG I    DPK R+K+L EE GW  D A++IW         N+ VD+  GVQ+L E+KD+++ GF+ A +EG LA E +RG+   + D ++H D  HRG GQ+ P  R  IYA  LTAKP LLEP+  ++I+AP + LG I +++  KRG + + +Q+    +  I A +PV E+F
Sbjct:  498 PLDEKTISLIHDGIITEDMDPKQRAKVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREVKDTIIQGFRLAMREGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETF 679          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.662e-35
Identity = 76/187 (40.64%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   11 PLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N++VD   G+QYL EI+D +V GF+WA + G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P LLEP+  ++I+     +G + SVLN  RG + +  Q+    +  ++A LPV+ESF
Sbjct:  500 PLDETTVELIATKEITEEQDPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTTGIQYLREIRDYIVQGFRWAMEAGPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLVRLDIKVAPDYIGSVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESF 682          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.658e-35
Identity = 75/187 (40.11%), Postives = 113/187 (60.43%), Query Frame = 2
Query:   11 PLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N++VD   G+QYL EI+D +V GF+WA++ G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P +LEP+  ++I+     +G + SVLN  RG + +  Q+    +  ++A LPV+ESF
Sbjct:  500 PLDETTIELIATREITEDQDPRERAKILREKAGWDADEARGIWAIDDRFF--NLIVDRTSGIQYLREIRDYIVQGFRWATEAGPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESF 682          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.658e-35
Identity = 75/187 (40.11%), Postives = 113/187 (60.43%), Query Frame = 2
Query:   11 PLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N++VD   G+QYL EI+D +V GF+WA++ G LA+E +RG+   + D V+H D  HRG  Q++P  +  I+A+ L+AKP +LEP+  ++I+     +G + SVLN  RG + +  Q+    +  ++A LPV+ESF
Sbjct:  500 PLDETTIELIATKEITEDQDPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREIRDYIVQGFRWATEAGPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESF 682          
The following BLAST results are available for this feature:
BLAST of CV885047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
U5S1_CHICK1.876e-4645.08116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB2.450e-4645.08116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE2.450e-4645.08116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN2.450e-4645.08116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN2.450e-4645.08116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO1.756e-4444.79114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_STAMF7.901e-3742.25Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_PYRAR5.662e-3540.64Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_THENV9.658e-3540.11Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRIL9.658e-3540.11Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_012C05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885047 ID=CV885047; Name=CV885047; organism=Citrus sinensis; type=EST; length=572bp
GGAAGCCCGACCTCTGGAAGAAGGTCTTGCTGAGGCCATAGATGATGGCC
GCATTGGTCCAAGGGATGATCCCAAGGCTCGATCTAAGATCTTGTCTGAG
GAGTTCGGCTGGGACAAGGATCTTGCGAAGAAGATTTGGTGTTTTGGTCC
TGAGACCACTGGCCCTAACATGGTCGTTGATATGTGTAAGGGAGTTCAAT
ACTTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAGTGGGCATCG
AAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCTGCTTTGAAGT
ATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGTGGTGGTCAAG
TCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCTCACAGCCAAG
CCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGGCTCCCGAGCA
GGCCCTTGGTGGTATTTACAGTGTTCTCAATCACAAACGTGGTCACGTGT
TCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACATCAAGGCTTAC
CTTCCCGTCATCGAGTCCTTTG
back to top