CV885047

Overview
NameCV885047
Unique NameCV885047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:472..1043. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 63/189 (33.33%), Postives = 98/189 (51.85%), Query Frame = 2
Query:   11 PLEEGLAEAIDDGRI--GPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            P+ + +  AI +G I  G   +PK  +K L+E  G D ++A+ I     +    NM +D  KGVQYLNE+ D ++ GF  A  EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   +  +RG +  +M++ G  +  I A  PV E F
Sbjct:  493 PMPDEIYNAIKEGIIPEGRVKNPKEVAKKLAE-LGMDYEIARGI----VDIYNGNMFIDNTKGVQYLNEVMDLLIDGFHQAMDEGPLAREPVMKVIVRLLDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMF 674          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 2
Query:   11 PLEEGLAEAIDDGRI--GPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            P+ + +  AI +G I  G   +PK  +K L+E  G D ++A+ I     +    NM +D  KGVQYLNE+ D ++ GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   +  +RG +  +M++ G  +  I A  PV E F
Sbjct:  493 PMPDEIYNAIKEGIIPEGRIKNPKEVAKKLAE-LGMDYEIARGI----VDVYNGNMFLDNTKGVQYLNEVMDLLIDGFHQAMDEGPLAKEPVMKVIVRLIDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMF 674          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 61/192 (31.77%), Postives = 101/192 (52.60%), Query Frame = 2
Query:    5 ARPLEEGLAEAIDDGRIGPRDDPKARSKILSE---EFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            A PL+E +  A  +G I   D  K   K +     E G +++ AK++          N++++M +G+  L+E ++ ++ GF+ A K G LA E  +G+  ++ D V H DAIHRG  Q+IP  R  +  +   A   LLEP+  V I  P+  +G     L+++RG +  +M++ G  +  IK+  PV E F
Sbjct:  495 AEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRVMTIYEG----NVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQIL-DMEQEG-DMTTIKSKAPVSEMF 680          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 60/184 (32.61%), Postives = 95/184 (51.63%), Query Frame = 2
Query:   14 LEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIE 565
            L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E
Sbjct:  495 LSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDE 671          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 60/184 (32.61%), Postives = 95/184 (51.63%), Query Frame = 2
Query:   14 LEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIE 565
            L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+ +D  KG+Q+LNE  + VV G   + ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E
Sbjct:  495 LSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDE 671          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 57/186 (30.65%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   83 SKILSEE---FGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYL-----------NEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRG---------GGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            SK+L EE    G  K+    I  FGP+  GPN++ D  K ++             +++ + VV  FQ  + +G L  E ++GIC  +    +  D+              GQVI   +  I    L   PRL+  +Y  ++QA  + LG +Y V++ +RG V +E  + GTP + +KA +PV+ESF
Sbjct:  731 SKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESF 916          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  167 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIE 565
            NM  DM +G+ ++ E+ D V+  F      G +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +        L  IKA +PV E
Sbjct:  560 NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILDIQTEEDRAL--IKAKVPVRE 690          
BLAST of CV885047 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.219e-14
Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  131 KIWCFGPETTGPNMVVD-------MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDV-VLHADAIHRG------------GGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNHKRGHVFEEMQRPGTPLYNIKAYLPVIESF 571
            K+  FGP   G N+++        + +G     E  DS+  GFQ A  EG LA E ++G+C  V  V  +  D I                G++I + R  I+ + L   PR++  +Y  +IQ     LG +Y+V+  + G +  E  + GTP + I+A++PV+E+F
Sbjct:  859 KLAGFGPSRVGCNILLSQDNLLGSLFEGTPAAFEYSDSIKNGFQLAVSEGPLANEPVQGMCVLVESVHKMSQDEIESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAF 1025          
The following BLAST results are available for this feature:
BLAST of CV885047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
EF2_PYRHO8.776e-2033.33Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_PYRAB8.776e-2033.33Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_META37.429e-1931.77Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
EF2_HALSA1.655e-1832.61Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS31.655e-1832.61Elongation factor 2 OS=Halobacterium salinarum (st... [more]
RIA1_SCHPO3.121e-1730.65Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
EF2_NANEQ3.816e-1534.59Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
RIA1_YEAST4.219e-1429.94Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012C05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885047 ID=CV885047; Name=CV885047; organism=Citrus sinensis; type=EST; length=572bp
GGAAGCCCGACCTCTGGAAGAAGGTCTTGCTGAGGCCATAGATGATGGCC
GCATTGGTCCAAGGGATGATCCCAAGGCTCGATCTAAGATCTTGTCTGAG
GAGTTCGGCTGGGACAAGGATCTTGCGAAGAAGATTTGGTGTTTTGGTCC
TGAGACCACTGGCCCTAACATGGTCGTTGATATGTGTAAGGGAGTTCAAT
ACTTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAGTGGGCATCG
AAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCTGCTTTGAAGT
ATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGTGGTGGTCAAG
TCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCTCACAGCCAAG
CCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGGCTCCCGAGCA
GGCCCTTGGTGGTATTTACAGTGTTCTCAATCACAAACGTGGTCACGTGT
TCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACATCAAGGCTTAC
CTTCCCGTCATCGAGTCCTTTG
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