CV885043

Overview
NameCV885043
Unique NameCV885043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5753 contig Csv1_Contig5753:186..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV885043 vs. ExPASy Swiss-Prot
Match: C79A1_SORBI (Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP79A1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 38/118 (32.20%), Postives = 59/118 (50.00%), Query Frame = -1 
Query:  263 TRVLVNVWTIGRDPALWENPNEFYPQRFLGKS---IDVKGRDFELLPFGTGRRICPGMSLGLKVVQSSLANLLHGFSWKLPGNMSNQELNMEETFGLSTPKKFPLEVVAQPRLSFHLY 607
            + V+++   +GR+P +W+ P  FYP R L  +   + +   D   + F TGRR C   SLG  +       LL GF+W  P  +   +L+  ++    T    PL + A+PRL  HLY
Sbjct:  439 SHVILSRTGLGRNPRVWDEPLRFYPDRHLATAASDVALTENDLRFISFSTGRRGCIAASLGTAMSVMLFGRLLQGFTWSKPAGVEAVDLSESKS---DTFMATPLVLHAEPRLPAHLY 553
The following BLAST results are available for this feature:
BLAST of CV885043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
C79A1_SORBI6.459e-1132.20Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885043 ID=CV885043; Name=CV885043; organism=Citrus sinensis; type=EST; length=607bp
GAAACAGCCCCATGTAAGTAAGTGTTTACGGAAAGCGATGGTAAAATATC
ACCACTAACAAAGTTCATTATTTAAAAGGCACAATATCTAAGCCCAAAAA
GATTACGTTGGCTAGGGTACACTGGCTCTCGTTATATCTTCAAATTCAGG
ACCATGTTCGCACTAGCAAACCAAAGCAAGACCATCAAGAAGCGCTTATT
CAAAATATATTAAAAGCGAACCAAGCCATAATTAGTTCTTTTGGATGCCA
GAATCACAGACTATAAAGATGGAATGAAAGCCTTGGCTGAGCCACGACTT
CAAGCGGAAATTTTTTCGGAGTGGAAAGGCCAAAAGTTTCCTCCATATTA
AGCTCCTGATTGCTCATATTTCCAGGCAATTTCCATGAAAATCCATGTAA
AAGATTAGCCAAACTTGATTGAACAACCTTAAGCCCTAGACTCATCCCTG
GGCAAATTCTTCTTCCTGTACCAAAAGGCAGCAACTCAAAATCACGCCCT
TTCACATCAATTGATTTTCCAAGGAACCTCTGAGGGTAAAATTCATTAGG
ATTTTCCCACAAAGCAGGGTCTCTCCCTATCGTCCATACATTAACTAGGA
CTCGGGT
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