CV885039

Overview
NameCV885039
Unique NameCV885039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885039_ssr768 microsatellite CV885039_ssr768:768..788. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.647e-35
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  385 TPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 726
            TPC ++   +++GPWT+EED IL+++I   GEG W SL K AGL R GKSCRLRW+NYLRP VKRG IT +E+ LI+ LH   GNRWS IA  +PGRTDNEIKN+W T ++K++
Sbjct:   15 TPCCTKMG-MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.647e-35
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = -2
Query:  391 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 699
            ++KGPWT  ED IL++Y+  HGEG WN++ K  GL R GKSCRLRW N+LRP++K+G  T EE+ LI++LH+K GN+W+++A HLPGRTDNEIKN+W TRI++
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.647e-35
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = -2
Query:  391 VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 699
            ++KGPWT  ED IL++Y+  HGEG WN++ K  GL R GKSCRLRW N+LRP++K+G  T EE+ LI++LH+K GN+W+++A HLPGRTDNEIKN+W TRI++
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.151e-35
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M + PC  ++  ++KGPWT EED +L+ +I  HG G W +L K AGL R GKSCRLRW+NYLRPD+KRGN + EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W T ++K++
Sbjct:    1 MGRAPC-CEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.809e-35
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  385 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 702
            E +KG WT+EED IL++Y+  HG+G WN +AK  GLKR GKSCRLRW+NYL P+VKRGN T +E+ LI+ LH   GNRWS IAK +PGRTDN++KN+W T + K++
Sbjct:   15 EYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 120          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 66/118 (55.93%), Postives = 89/118 (75.42%), Query Frame = -2
Query:  382 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIK 735
            M + PC  ++  +R+GPWT EED  L+++I N+G   W ++ K AGL R GKSCRLRW NYLRPD+KRG  +  E+ LI++LHA  GNRWS+IA  LPGRTDNEIKN+W TR++K+++
Sbjct:    1 MGRKPC-CEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLR 117          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.258e-35
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M + PC   +  V+KGPWT EED  LI++I  +G+  W ++ K AGLKR GKSCRLRW NYLRPD+KRG ++  E+ L+++LH++ GNRWSKIA  LPGRTDNEIKN W T I+K++
Sbjct:    1 MGRQPC-CDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 66/118 (55.93%), Postives = 88/118 (74.58%), Query Frame = -2
Query:  382 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIK 735
            M++ PC  ++  +++GPWT EED  L +Y+  +G   W  + K AGL R GKSCRLRW+NYLRPD+K+G +T  E+  I+ELHA  GNRWSKIA H+PGRTDNEIKN+W T I+K++K
Sbjct:    1 MERQPCR-EKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLK 117          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.378e-34
Identity = 61/109 (55.96%), Postives = 82/109 (75.23%), Query Frame = -2
Query:  385 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 711
            +  E +KG WT+EED IL++Y+ NHG G WN + +  GLKR GKSCRLRW+NYL P+V +GN T +E+ LI+ LH   GNRWS IAK +PGRTDN++KN+W T + K++
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.378e-34
Identity = 61/109 (55.96%), Postives = 82/109 (75.23%), Query Frame = -2
Query:  385 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 711
            +  E +KG WT+EED IL++Y+ NHG G WN + +  GLKR GKSCRLRW+NYL P+V +GN T +E+ LI+ LH   GNRWS IAK +PGRTDN++KN+W T + K++
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
The following BLAST results are available for this feature:
BLAST of CV885039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB5_ARATH1.647e-3559.65Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
GAM1_ORYSJ1.647e-3560.19Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI1.647e-3560.19Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB4_ORYSJ2.151e-3557.26Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
WER_ARATH2.809e-3560.38Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB2_PHYPA3.669e-3555.93Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
ODO1_PETHY6.258e-3557.26Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB15_ANTMA1.067e-3455.93Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
GL1_ARATH2.378e-3455.96Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY2.378e-3455.96Trichome differentiation protein GL1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885039 ID=CV885039; Name=CV885039; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTAGATCTGCTATATCAACACATATATATAAGGTCCTATATATTA
CAAGCCATAGATATAACTAAAGATAAAAGTTTGAGCCCCGCTAATATTAT
AAGGATCCAAAATCATAACTCGAACCCATGCATATAAATAATCATGGTGC
TTAATCCCCGTTATATAACCAGAGATCCTCCATACTCCAGTAGTTTTCAT
TGACTTCAGAAGGAATAGGTGCCATATTATCTAATGGAAAAGCTTGATGA
GGATCCATATTATTGTTTAATGGATATTGTGGTGCTGAATAATCTTCCAT
GGTGTATGCAGCAGTGGACATTTGGCTTGAGCTTGCTTGCTCATTGGCCT
CTGAACTTTGCCCTGAAAATGTTTCTGCTTGCTTAATTTGCTTCTGGATT
CTGGTTCTCCAAAAATTCTTAATTTCATTGTCGGTCCTTCCTGGTAGATG
CTTTGCAATTTTGGACCACCTGTTTCCCCACTTGGCATGAAGCTCCATGA
TCAAAAGCTGCTCCTCTGGTGTAATATTCCCCCTCTTAACGTCCGGTCGG
AGATAGTTCAGCCACCTGAGCCGGCAACTCTTTCCGGTACGTTTTAGGCC
AGCTGCTTTAGCTAGTGAGTTCCAGACGCCTTCGCCGTGATTTGCTATAT
AGTTGATGAGGATCAAGTCTTCTTCCATGGTCCATGGCCCCTTTCGGACT
TCAGCTTCTTGAGAATTGCATGGAGTTTTATCCATCTCTTAATTTACATA
GAGAAATTAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAAAGAAGAGGAAG
AGAAACCT
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