CV885039

Overview
NameCV885039
Unique NameCV885039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885039_ssr768 microsatellite CV885039_ssr768:768..788. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.919e-34
Identity = 63/111 (56.76%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  379 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 711
            Q  +++KG W+ EED  L+ Y+ ++G+G W+ +AK AGL+R GKSCRLRW+NYLRPD+KRG  +P+E+ LI+  H+  GNRWS+IA  LPGRTDNEIKNFW + I+K++K+
Sbjct:   14 QVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKK 124          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.919e-34
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  373 KTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE 729
            + PC ++   + +G WT +ED+ LI YI  HG   W +L K AGL R GKSCRLRW+NYLRPD+KRGN T EE+  I+ LH   GN+WSKIA  LPGRTDNEIKN W T ++K++ Q E
Sbjct:    5 RAPCCAKVG-LNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQRE 122          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.036e-34
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = -2
Query:  370 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAET 702
            E+ +G WT  ED IL +YI  HGEG W++L   AGLKR GKSCRLRW NYLRP +KRGNI+ +E+ LI+ LH   GNRWS IA  LPGRTDNEIKN W + ++K++ + +T
Sbjct:   13 ELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQT 123          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.629e-33
Identity = 62/113 (54.87%), Postives = 85/113 (75.22%), Query Frame = -2
Query:  388 CNSQEAE--VRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 720
            C  +E +  V++G W  EED+IL +Y+  HGEG W  +++ +GLKR GKSCRLRW NYLRP++KRG+++P+EQ LI+ +H   GNRWS IA  LPGRTDNE+KN+W T + K+
Sbjct:    3 CKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 7.650e-33
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = -2
Query:  379 EAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 708
            + +VRKG W+ EED  L N+I  HG G W+S+ + A L R GKSCRLRW+NYLRPD+KRG  + +E+  I+ LH   GNRWS+IA HLPGRTDNEIKNFW + I+K+++Q
Sbjct:   11 QPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQ 120          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.991e-33
Identity = 61/122 (50.00%), Postives = 86/122 (70.49%), Query Frame = -2
Query:  370 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAET 735
            M + PC   +  V+KGPWT EED+IL++YI  HG G W ++    GL R  KSCRLRW NYLRP +KRG+ T  E+ +I+ L A  GNRW+ IA +LP RTDN+IKN+W T ++K++++ ++
Sbjct:    1 MGRPPC-CDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQS 121          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 62/116 (53.45%), Postives = 84/116 (72.41%), Query Frame = -2
Query:  388 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQ 735
            M +  C ++E  V++G WT +ED  L  Y+  HGEG W  + + AGL+R GKSCRLRWLNYLRP+++RGNI+ +E+ LI+ LH   GNRWS IA  LPGRTDNEIKN+W + + ++
Sbjct:    1 MGRRACCAKEG-VKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR 115          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.160e-31
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGV-WNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M + PC   +A V+KGPW+ EED  L +YI N G G  W +L +  GLKR GKSCRLRWLNYLRP++K G  + EE+ +I  L+   G+RWS IA  LPGRTDN+IKN+W TR++K++
Sbjct:    1 MGRAPC-CDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.595e-30
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGV-WNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M + PC   + +V++GPW+ EED  L +YI  +G G  W S    AGL+R GKSCRLRWLNYLRP++K G+ + EE  +I  L A  G+RWS IA HLPGRTDN+IKN+W T+++K++
Sbjct:    1 MGRAPC-CDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKL 117          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.641e-30
Identity = 62/118 (52.54%), Postives = 83/118 (70.34%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGV-WNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M + PC   +A V++GPW+ EED  L +YI   G G  W +L   AGL+R GKSCRLRWLNYLRP+++ G+ T EE  +I  L A  G+RWS IA HL GRTDN+IKN+W T+++K++
Sbjct:    1 MGRAPC-CDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKL 117          
The following BLAST results are available for this feature:
BLAST of CV885039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB46_ARATH6.919e-3456.76Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB1_MAIZE6.919e-3456.30Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
TT2_ARATH9.036e-3458.56Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB82_ARATH2.629e-3354.87Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB3_HORVU7.650e-3358.18Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB06_ANTMA9.991e-3350.00Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYBC_MAIZE1.884e-3153.45Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
RAX3_ARATH7.160e-3154.24Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
RAX1_ARATH1.595e-3052.54Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
RAX2_ARATH4.641e-3052.54Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885039 ID=CV885039; Name=CV885039; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTAGATCTGCTATATCAACACATATATATAAGGTCCTATATATTA
CAAGCCATAGATATAACTAAAGATAAAAGTTTGAGCCCCGCTAATATTAT
AAGGATCCAAAATCATAACTCGAACCCATGCATATAAATAATCATGGTGC
TTAATCCCCGTTATATAACCAGAGATCCTCCATACTCCAGTAGTTTTCAT
TGACTTCAGAAGGAATAGGTGCCATATTATCTAATGGAAAAGCTTGATGA
GGATCCATATTATTGTTTAATGGATATTGTGGTGCTGAATAATCTTCCAT
GGTGTATGCAGCAGTGGACATTTGGCTTGAGCTTGCTTGCTCATTGGCCT
CTGAACTTTGCCCTGAAAATGTTTCTGCTTGCTTAATTTGCTTCTGGATT
CTGGTTCTCCAAAAATTCTTAATTTCATTGTCGGTCCTTCCTGGTAGATG
CTTTGCAATTTTGGACCACCTGTTTCCCCACTTGGCATGAAGCTCCATGA
TCAAAAGCTGCTCCTCTGGTGTAATATTCCCCCTCTTAACGTCCGGTCGG
AGATAGTTCAGCCACCTGAGCCGGCAACTCTTTCCGGTACGTTTTAGGCC
AGCTGCTTTAGCTAGTGAGTTCCAGACGCCTTCGCCGTGATTTGCTATAT
AGTTGATGAGGATCAAGTCTTCTTCCATGGTCCATGGCCCCTTTCGGACT
TCAGCTTCTTGAGAATTGCATGGAGTTTTATCCATCTCTTAATTTACATA
GAGAAATTAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAAAGAAGAGGAAG
AGAAACCT
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