CV885039

Overview
NameCV885039
Unique NameCV885039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885039_ssr768 microsatellite CV885039_ssr768:768..788. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -2
Query:  379 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 702
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          

HSP 2 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = -2
Query:  379 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 714
            S +  + K  WT EED  L   +  +G   W  +A      RT   C+ RW   L P++ +G  T EE   ++EL  K+G  RWS IAKHL GR   + +  W   +  ++K+
Sbjct:   33 SGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 144          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -2
Query:  379 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 702
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          

HSP 2 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = -2
Query:  379 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 714
            S +  + K  WT EED  L   +  +G   W  +A      RT   C+ RW   L P++ +G  T EE   ++EL  K+G  RWS IAKHL GR   + +  W   +  ++K+
Sbjct:   33 SGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 144          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -2
Query:  379 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 702
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -2
Query:  379 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 702
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE  +I + H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195          

HSP 2 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = -2
Query:  379 SQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 714
            S +  + K  WT EED  L   +  +G   W  +A      RT   C+ RW   L P++ +G  T EE   ++EL  K+G  RWS IAKHL GR   + +  W   +  ++K+
Sbjct:   33 SGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 144          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = -2
Query:  379 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 702
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T  E  +I E H + GNRW++IAK LPGRTDN IKN W + ++++++Q
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.562e-22
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = -2
Query:  379 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 702
            E+ KGPWT EED  +I  +  +G   W+ +AK   LK R GK CR RW N+L P+VK+ + T EE   I E H + GNRW++IAK LPGRTDN IKN W + ++++ +Q
Sbjct:   86 ELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQ 192          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.562e-22
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = -2
Query:  385 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 693
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+ + T EE  +I E H   GNRW++IAK LPGRTDN +KN W + I++++
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          

HSP 2 Score: 73.559 bits (179), Expect = 1.500e-12
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = -2
Query:  376 EMDKTPCNSQEAEVR-------KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR-WSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 738
            + D+  C   +++V        K  WT EED  L   + ++G+  W  LA      R+ + C+ RWL  L PD+ +G  T EE   ++EL  K+G + W+ IAKHL GR   + +  W   +  ++K++
Sbjct:    9 DQDELHCQDTDSDVPEQRDGRCKVKWTQEEDEQLKMLVRHYGQNDWKFLASHFP-NRSDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 136          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.036e-21
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  385 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 693
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+   T EE  +I E H   GNRW++IAK LPGRTDN +KN W + I++++
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKV 184          

HSP 2 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = -2
Query:  376 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR-WSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 693
            K  WT EED  L   +   G+  W  LA      RT + C+ RWL  L PD+ +G  T EE   ++EL  K+G + W+ IAKHL GR   + +  W   +  ++K++
Sbjct:   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 136          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.036e-21
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  385 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLK-RTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 693
            KGPWT EED  +I  +  +G   W  +AK   LK R GK CR RW N+L P+VK+   T EE  +I E H   GNRW++IAK LPGRTDN +KN W + I++++
Sbjct:   83 KGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKV 184          

HSP 2 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = -2
Query:  376 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR-WSKIAKHLPGRTDNEIKNFWRTRIQKQIKQA 693
            K  WT EED  L   +   G+  W  LA      RT + C+ RWL  L PD+ +G  T EE   ++EL  K+G + W+ IAKHL GR   + +  W   +  ++K++
Sbjct:   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 136          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.353e-21
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  382 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIK 693
            KGPWT EED  +I  +  +G   W  +AK     R GK CR RW N+L P+VK+ + T EE  +I + H   GNRW++IAK LPGRTDN +KN W + I+++++
Sbjct:   83 KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLR-GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVE 185          
The following BLAST results are available for this feature:
BLAST of CV885039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB_MOUSE9.373e-2347.71Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN9.373e-2347.71Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK9.373e-2347.71Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN9.373e-2347.71Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_CHICK1.224e-2247.71Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYB_XENLA3.562e-2248.62Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBB_CHICK3.562e-2249.04Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBB_MOUSE1.036e-2149.04Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN1.036e-2149.04Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYBB_XENLA1.353e-2146.15Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885039 ID=CV885039; Name=CV885039; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTAGATCTGCTATATCAACACATATATATAAGGTCCTATATATTA
CAAGCCATAGATATAACTAAAGATAAAAGTTTGAGCCCCGCTAATATTAT
AAGGATCCAAAATCATAACTCGAACCCATGCATATAAATAATCATGGTGC
TTAATCCCCGTTATATAACCAGAGATCCTCCATACTCCAGTAGTTTTCAT
TGACTTCAGAAGGAATAGGTGCCATATTATCTAATGGAAAAGCTTGATGA
GGATCCATATTATTGTTTAATGGATATTGTGGTGCTGAATAATCTTCCAT
GGTGTATGCAGCAGTGGACATTTGGCTTGAGCTTGCTTGCTCATTGGCCT
CTGAACTTTGCCCTGAAAATGTTTCTGCTTGCTTAATTTGCTTCTGGATT
CTGGTTCTCCAAAAATTCTTAATTTCATTGTCGGTCCTTCCTGGTAGATG
CTTTGCAATTTTGGACCACCTGTTTCCCCACTTGGCATGAAGCTCCATGA
TCAAAAGCTGCTCCTCTGGTGTAATATTCCCCCTCTTAACGTCCGGTCGG
AGATAGTTCAGCCACCTGAGCCGGCAACTCTTTCCGGTACGTTTTAGGCC
AGCTGCTTTAGCTAGTGAGTTCCAGACGCCTTCGCCGTGATTTGCTATAT
AGTTGATGAGGATCAAGTCTTCTTCCATGGTCCATGGCCCCTTTCGGACT
TCAGCTTCTTGAGAATTGCATGGAGTTTTATCCATCTCTTAATTTACATA
GAGAAATTAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAAAGAAGAGGAAG
AGAAACCT
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