CV885035

Overview
NameCV885035
Unique NameCV885035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.464e-63
Identity = 121/198 (61.11%), Postives = 149/198 (75.25%), Query Frame = -1
Query:  271 TKRWHVYSASAEA----GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSRAD--CSTSPRSILKCCWS 843
            TK+WHVYSASA A    G++ N VYTLEMCMTGLD+++ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VL CF+P +FSVA+HS +    +     +DL+ Y C E   E LG   G+++Y SF +    C  SPRS LKC WS
Sbjct:  158 TKKWHVYSASAPARNGNGNNNNNVYTLEMCMTGLDKEKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFEPKQFSVAVHSSVAQKSYDSGLSVDLEDYGCRETTIELLGEERGTVMYQSFEKLGRYCG-SPRSTLKCEWS 354          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.464e-63
Identity = 119/194 (61.34%), Postives = 144/194 (74.23%), Query Frame = -1
Query:  271 TKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSRAD--CSTSPRSILKCCWS 843
            TK+WHVYSAS+   ++ N VYTLEMCMTGLD+ +ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VL CFKP +FSVA+HS +    +     +DL  Y C E   E LG   G+++Y  F +    C  SPRS LKC WS
Sbjct:  158 TKKWHVYSASSANSNNKNNVYTLEMCMTGLDKDKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFKPKQFSVAVHSTVAQKSYDSGLSVDLDDYGCKESTMESLGEERGTVMYQRFEKLGRYCG-SPRSTLKCEWS 350          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.696e-62
Identity = 114/190 (60.00%), Postives = 145/190 (76.32%), Query Frame = -1
Query:  274 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSR-ADCSTSPRSILKCCW 840
            ++WHVYSA A +   ++PVYT+EMCMT L+R +ASVFYKTN SSA  +T++SG+R ILP S ICDFEFDPCGYSMN++EG AVSTIH+TPEDGFSY+SFEAVGYD + V L+ L+ RVL CF+P EFS+AL +DI  +    T  + +KGY   EK  EELG +GS++Y  F +  +   SPRS+LKCCW
Sbjct:  161 QKWHVYSACAASTRTLDPVYTMEMCMTSLNRDKASVFYKTNSSSATSVTDNSGLRDILPNSRICDFEFDPCGYSMNAVEGPAVSTIHITPEDGFSYSSFEAVGYDPKSVNLSDLVARVLNCFQPGEFSIALQADIASELLEKTSSVHVKGYRVEEKTCEELGMDGSIVYQKFVKTTERCESPRSVLKCCW 350          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.215e-62
Identity = 114/187 (60.96%), Postives = 140/187 (74.87%), Query Frame = -1
Query:  280 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKC 840
            + WHVY ASA++ S  + VYTLEMCMTGLDR++ASVF+K    SAA MT +SGIRKILP SEICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  GYD + + L  ++ RVLACF+P EFSVA+H D          +LD+KGY C EK ++ LG +GS++Y  F +A    SPRS LKC
Sbjct:  159 QNWHVYCASADSVSPADSVYTLEMCMTGLDREKASVFFKQQTGSAAEMTVNSGIRKILPNSEICDFDFEPCGYSMNSVEGPAVSTIHITPEDGFSYASFETAGYDLKAMNLNEMVMRVLACFQPTEFSVAVHVDNASKSFEQGCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVKASDCGSPRSTLKC 345          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.457e-61
Identity = 117/195 (60.00%), Postives = 150/195 (76.92%), Query Frame = -1
Query:  271 KRWHVYSASAEAGSHVNP-VYTLEMCMTGLDRKRASVFYKTNESSA--AMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSR-ADCSTSPRSILKCCWS 840
            K+WHVY+ASA+  S  N  VYTLEMCMTGLD+++ASVFYK NE+      MT++SGIRKILPKS+ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL+CF+P +FSVA+HS +  + +     +DL+ Y C E+ +E LG  +G+++Y +F +      SPRS LKC WS
Sbjct:  159 KKWHVYAASAQTSSDCNNNVYTLEMCMTGLDKEKASVFYK-NETGGENGSMTDNSGIRKILPKSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGSNAYKPEISVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTLKCEWS 352          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.588e-60
Identity = 116/194 (59.79%), Postives = 147/194 (75.77%), Query Frame = -1
Query:  274 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH--GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRAD---CSTSPRSILKCCW 840
            ++WHVYSA+AE  ++ +PVYTLEMCMTGLD+++ASVF+K+  +SAA+MTE SGIRKILP S ICDF+F+PCGYSMN+IEG AVSTIH+TPEDGFSYASFEAVGYD +VV L  L+ERVLACF+P EFS+A+H+D    +        +++ GYS  E   EELG  GS+ Y  F +     C  +P+  LKCCW
Sbjct:  174 QKWHVYSATAET-NYDDPVYTLEMCMTGLDKEKASVFFKSQSASAAVMTESSGIRKILPDSVICDFDFEPCGYSMNAIEGPAVSTIHITPEDGFSYASFEAVGYDLQVVDLNLLVERVLACFEPKEFSIAVHADTDTADKVLARNCSVNVIGYSREEGGIEELGLGGSVFYQKFCKGTAPVCPPAPKKTLKCCW 366          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.074e-60
Identity = 110/187 (58.82%), Postives = 137/187 (73.26%), Query Frame = -1
Query:  280 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKC 840
            + WH+Y AS+++ S    VYTLEMCMTGLDR++ASVF+K    SAA MT +SGIRKIL  SEICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  GYD + + L  ++ RVLACF+P EFSVA+H D          +LD+KGY C EK ++ LG +GS++Y  F +     SPRS LKC
Sbjct:  159 QNWHIYCASSDSVSPEGSVYTLEMCMTGLDREKASVFFKEQTGSAAEMTVNSGIRKILRNSEICDFDFEPCGYSMNSVEGSAVSTIHITPEDGFSYASFETAGYDLKAINLNEMVMRVLACFQPTEFSVAVHVDNASKSFEQGCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTSYCGSPRSTLKC 345          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.033e-60
Identity = 112/194 (57.73%), Postives = 143/194 (73.71%), Query Frame = -1
Query:  274 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSRAD----CSTSPRSILKCCW 840
            ++WHVYSASAE  S   PVYTLEMCMTGL +++ASVF+K+   +AA+MTE SGIRKILP S+ICDF+F+PCGYSMN+IEG A+STIH+TPEDGFSYASFEAVGYD +   L  L+ERVLACF+P+EFS+A+H++I  +       +++ GYS  E   EELG    S+ Y  F +A      +  P+  LKCCW
Sbjct:  159 QKWHVYSASAETISFEEPVYTLEMCMTGLKKEKASVFFKSQSPNAAVMTESSGIRKILPDSKICDFDFEPCGYSMNAIEGPAISTIHITPEDGFSYASFEAVGYDLKKTDLNQLVERVLACFEPSEFSIAIHAEIAANSMEHNCYVNVNGYSREEGGIEELGFGAASVFYQKFCKASTGFGATNKPKPALKCCW 352          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.474e-55
Identity = 107/188 (56.91%), Postives = 136/188 (72.34%), Query Frame = -1
Query:  277 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCC 840
            ++WHVYSA+AE  S+ +PVYTLEMCMTGLD+ +ASVF+K+  +SAA+MTE SGIRKILP S ICDF+F+PCGYSMN+IEG AVSTIH+TPEDGFSYASFEAVGYD ++V +  L+ERVL CF+P EFS+A+  D           +++ GY   E   E LG  GS++Y  F +    +      KCC
Sbjct:  183 QKWHVYSATAEP-SYDDPVYTLEMCMTGLDKGKASVFFKSESASAAVMTETSGIRKILPDSAICDFDFEPCGYSMNAIEGPAVSTIHITPEDGFSYASFEAVGYDLKIVDVNQLVERVLNCFQPREFSIAVSVDTADKVLEQYCAVNVAGYCREEGGVEGLGVGGSVLYQKFGKVATVSGLNKSPKCC 369          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.439e-53
Identity = 102/159 (64.15%), Postives = 125/159 (78.62%), Query Frame = -1
Query:  376 TKRWHVYSASAEA--GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDT-FMLDLKGYSCGE 843
            TK+WHVYSASA A   +  N VYTLEMCM+GLD+ +ASVF+K   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNS+EGDA STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL CF+P +FSVA+HS +    +  +   +DL+ Y C E
Sbjct:  158 TKKWHVYSASAPAKNSNGDNNVYTLEMCMSGLDKDKASVFFKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSVEGDASSTIHVTPEDGFSYASFEAVGYDFTTMDLSQLVSRVLTCFEPKQFSVAVHSSVAQKSYDHSGLSVDLEDYGCRE 316          
The following BLAST results are available for this feature:
BLAST of CV885035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM2_BRAJU4.464e-6361.11S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_ARATH4.464e-6361.34S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_DAUCA1.696e-6260.00S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_VICFA2.215e-6260.96S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]
DCAM3_BRAJU5.457e-6160.00S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]
DCAM2_DIACA1.588e-6059.79S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_PEA2.074e-6058.82S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM_SPIOL6.033e-6057.73S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM1_DIACA4.474e-5556.91S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM1_BRAJU1.439e-5364.15S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885035 ID=CV885035; Name=CV885035; organism=Citrus sinensis; type=EST; length=846bp
TAATAATATGACTCTTATTATAAAAGAAGATACTGGTTTAACATCTACAT
CTCCGGAAATCCAACATAACAGAAATCCAAAAACATAAGACCTTGTTCAC
AATAACAGGAAAAATGCAGCAAAACGGAAAGGTAAAGGCTGCTCAAGCCC
TACCATTACATAACCCCACCACATTTTATTATATAAGCGAAGGATTAAAA
TGAAAAAAACAAACACGATATTATATCCGGGACACTATTTCCCTTCAACT
TCCTCGTCCTTCTCGTCCTCGCTCCAACAGCATTTCAAGATTGACCTAGG
AGATGTGGAGCAATCAGCCCTCGAAAAGCTGTAGTAGATCAGCGAACCAT
TATTACCGAGCTCTTCATATATCTTTTCTCCACAGGAATATCCCTTCAAG
TCCAGCATGAAGGTGTCTCCATGTTCATCGCCAACAATGTCAGAATGCAG
AGCAACAGAAAACTCAGCGGGTTTGAAGCAAGCAAGCACCCTCTCAAGCA
AGGGAGTCAACTTCACAACCTCAAAATCATAACCCACAGCCTCAAAACTT
GCATAACTGAAACCATCTTCAGGTGTGACGTGGATAGTAGATACTGCATC
CCCTTCAATACTATTCATGGAGTAACCACAAGGGTCAAACTCAAAATCAC
AAATCTCAGATTTTGGAAGAATCTTTCTGATGCCAGAGTCCTCGGTCATC
ATAGCGGCTGAGCTTTCATTAGTTTTGTAGAAGACAGATGCCCTCTTTCT
GTCCAAACCAGTCATGCACATCTCTAGAGTGTAAACTGGGTTTACATGGC
TTCCTGCTTCAGCAGAGGCAGAGTAAACATGCCATCTCTTTGTGTT
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