CV885035

Overview
NameCV885035
Unique NameCV885035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.916e-44
Identity = 96/197 (48.73%), Postives = 127/197 (64.47%), Query Frame = -1
Query:  280 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNE----SSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLK--GYSCGEKIYEELGNNGSLIYYSFSRAD----CSTSPRSILKC 840
            ++WH+Y A+        P+ TLEMCMTGLD+++ASVF+KT+     S A  MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG+D   +    L++RVL CF P+EFSVA+ +   G  H  T+  +L    Y C   + +EL   G LIY SF   +       SP+S+L C
Sbjct:  169 QKWHIYYATQHPEQ---PMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAV-TIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHC 361          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.303e-43
Identity = 96/197 (48.73%), Postives = 127/197 (64.47%), Query Frame = -1
Query:  280 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNE----SSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLK--GYSCGEKIYEELGNNGSLIYYSFSRAD----CSTSPRSILKC 840
            ++WH+Y A+        P+ TLEMCMTGLD+++ASVF+KT+     S A  MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG+D   +    L++RVL CF P+EFSVA+ +   G  H  T+  +L    Y C   + +EL   G LIY SF   +       SP+S+L C
Sbjct:  169 QKWHIYYATQHPEQ---PMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGLAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAV-TIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHC 361          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.131e-43
Identity = 94/195 (48.21%), Postives = 126/195 (64.62%), Query Frame = -1
Query:  280 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESS----AAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTF--MLDLKGYSCGEKIYEELGNNGSLIYYSFSRAD--CSTSPRSILKC 840
            ++WHV+ A+        P+  LEMCMTGLD+K+A VF+KTN       A  MT+ SGI +I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E +G D   +    L++RVL CF P+EFSVA+ +   G  H  T+   L  + Y C   + +EL   G L+Y SF  A+   +TSP+S+  C
Sbjct:  169 QKWHVFYATEYPEQ---PMVNLEMCMTGLDKKKACVFFKTNADGNTTCAKEMTKLSGISEIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVMGLDATALSYGDLVKRVLRCFGPSEFSVAV-TIFGGRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAVATSPKSVFHC 359          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.752e-43
Identity = 95/197 (48.22%), Postives = 127/197 (64.47%), Query Frame = -1
Query:  280 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNE----SSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTF--MLDLKGYSCGEKIYEELGNNGSLIYYSFSR----ADCSTSPRSILKC 840
            ++WH+Y A+ +      P+ TLEMCMTGLD+ +ASVF+KT+     S A  MT+ SGI  I+P+ E+CDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E  G D   +    +++RVL CF P+EFSVA+ +   G  H  T+   LD + Y C   + +EL   G LIY SF+     A  + SPRS+  C
Sbjct:  162 QKWHIYYATEQPEQ---PMVTLEMCMTGLDKTKASVFFKTHADGHVSCAKEMTKLSGISDIIPEMEVCDFDFEPCGYSMNAINGSAFSTIHVTPEDGFSYASYEVQGMDASALAYGDIVKRVLRCFGPSEFSVAV-TIFGGRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHC 354          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 55/149 (36.91%), Postives = 77/149 (51.68%), Query Frame = -1
Query:  439 NTKRWHVYSASA------------EAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSI-EGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 846
            N + W++Y+ S             E     +P  T+E+ M  LD +  S+FYK   + A   T  SGI  ILP   I DF FDPCGYSMN I +     TIH+TPE+ FSY SFE    +  +     L+ +V+  FKP +F V + ++
Sbjct:  150 NLECWYLYTFSRSDIKITPQLISDEKNVDSDPDQTIEILMQDLDPETMSIFYKNKFNDANGATVKSGIDTILPTMHIDDFLFDPCGYSMNGINDKGEYMTIHITPENQFSYVSFET---NVALSNYRKLINQVINTFKPGKFIVTIFAN 295          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 59/182 (32.42%), Postives = 87/182 (47.80%), Query Frame = -1
Query:  313 NTKRWHVYSASAEAGSHVNPV-YTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGD---TFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRAD 846
            N   W++Y A       +     T E+ M  LD      F+K    SA   T +SGI  +LP S I DF+FDPCGYSMN +  +   TIH+TPE   SY SF+    +  +     LL +VL  FKP  F+ AL+++  G   GD    F +++  Y+   K          ++  ++ + D
Sbjct:  178 NKDHWNLYIADFRKNPTLQRTEQTFEVMMHDLDETVMKQFFKREGVSAWDTTVNSGIADLLPGSMIDDFQFDPCGYSMNGLLNEFYWTIHITPESHCSYVSFDT---NVALADYNQLLAKVLNVFKPGRFTAALYAE-DGAPCGDPYTAFDVNVPSYAIQNKTVHGFDGGYDVVVSNYQQLD 355          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  153 NSDCWYLYTLDLPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  153 NSDCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  153 NSDCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        ++ P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  153 NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
The following BLAST results are available for this feature:
BLAST of CV885035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM_ORYSJ7.916e-4448.73S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI2.303e-4348.73S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_MAIZE5.131e-4348.21S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_HORCH8.752e-4348.22S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_DROME4.836e-1736.91S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_DICDI4.836e-1732.42S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_RAT9.121e-1637.04S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]
DCAM_BOVIN9.121e-1637.04S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]
DCAM_MESAU1.191e-1537.04S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM_HUMAN3.466e-1536.30S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885035 ID=CV885035; Name=CV885035; organism=Citrus sinensis; type=EST; length=846bp
TAATAATATGACTCTTATTATAAAAGAAGATACTGGTTTAACATCTACAT
CTCCGGAAATCCAACATAACAGAAATCCAAAAACATAAGACCTTGTTCAC
AATAACAGGAAAAATGCAGCAAAACGGAAAGGTAAAGGCTGCTCAAGCCC
TACCATTACATAACCCCACCACATTTTATTATATAAGCGAAGGATTAAAA
TGAAAAAAACAAACACGATATTATATCCGGGACACTATTTCCCTTCAACT
TCCTCGTCCTTCTCGTCCTCGCTCCAACAGCATTTCAAGATTGACCTAGG
AGATGTGGAGCAATCAGCCCTCGAAAAGCTGTAGTAGATCAGCGAACCAT
TATTACCGAGCTCTTCATATATCTTTTCTCCACAGGAATATCCCTTCAAG
TCCAGCATGAAGGTGTCTCCATGTTCATCGCCAACAATGTCAGAATGCAG
AGCAACAGAAAACTCAGCGGGTTTGAAGCAAGCAAGCACCCTCTCAAGCA
AGGGAGTCAACTTCACAACCTCAAAATCATAACCCACAGCCTCAAAACTT
GCATAACTGAAACCATCTTCAGGTGTGACGTGGATAGTAGATACTGCATC
CCCTTCAATACTATTCATGGAGTAACCACAAGGGTCAAACTCAAAATCAC
AAATCTCAGATTTTGGAAGAATCTTTCTGATGCCAGAGTCCTCGGTCATC
ATAGCGGCTGAGCTTTCATTAGTTTTGTAGAAGACAGATGCCCTCTTTCT
GTCCAAACCAGTCATGCACATCTCTAGAGTGTAAACTGGGTTTACATGGC
TTCCTGCTTCAGCAGAGGCAGAGTAAACATGCCATCTCTTTGTGTT
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