CV885035

Overview
NameCV885035
Unique NameCV885035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        ++ P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  153 NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        ++ P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  153 NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        ++ P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  153 NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 51/146 (34.93%), Postives = 81/146 (55.48%), Query Frame = -1
Query:  415 RWHVYS--ASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPK-SEICDFEFDPCGYSMNSI--EGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGD 837
            RW++Y+     E  +H  P +TLE+ M+ LD +    F K            +GI KI+P  +++ D  FDPCGYSMN+   + D  +TIHVTPE  FS+ASFE    + ++V L     +VL CF+P +  + + ++ + ++  D
Sbjct:  171 RWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMRAGIDKIIPAGADVHDELFDPCGYSMNAYMNDTDQYATIHVTPEKAFSFASFET---NQDLVCLYSQTRKVLQCFRPNKILMTVFANDISEKGKD 313          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis GN=amd1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -1
Query:  448 NTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 846
            N+  W++Y+        ++ P  TLE+ M+ LD +    FY     +A  +T  SGIR ++  S I    F PCGYSMN ++ D    TIH+TPE  FSY SFE    +  +     L+ +V+  FKP +F   L
Sbjct:  155 NSDCWYLYTLDIPDEYVISQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSGIRDLITGSVIDATMFSPCGYSMNGMKSDGTYWTIHITPEPDFSYVSFET---NVSLTTYDDLISKVVDVFKPRKFVTTL 286          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 57/179 (31.84%), Postives = 79/179 (44.13%), Query Frame = -1
Query:  319 RWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFE-FDPCGYSMNSI--EGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDE--HGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSR 837
            RW +Y+          P +TLE+ M GL     S F              S I  ILP   +   E F PCGYS+N +    D   TIHVTPE  FSY SFE    +   + L   + +VL  FKP++F + + ++ + +E       + DLK   C     + L     +LIY  F R
Sbjct:  175 RWFLYTMVTPQAVFPFPEHTLEILMNGLPEDVLSTFSPNVSKDGKDCRMKSAINTILPPDIVVHEELFSPCGYSLNGLIPHSDHYITIHVTPEPDFSYVSFET---NQHTLNLCEQMLKVLEIFKPSKFLLTIFTNELSNEGKKMQKNLWDLKICGCRRTNLQFLELPTETLIYVQFER 350          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_TRYCR (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = -1
Query:  439 LEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICD-------FEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 777
            L M M GLDR +   ++     S    TE + IRK     ++ D        +F+PCGYS+N+I G    TIH+TPED  S+AS+E    +   V  +  +  VL  F P  FSV +  D
Sbjct:  193 LSMTMYGLDRTQTKHWFSDRFISTG--TETAAIRKATKLDKVADDSWKLHDLQFEPCGYSINTIRGAEYQTIHITPEDHCSFASYET---NTPAVNYSERINTVLGVFAPIRFSVIVFID 307          
The following BLAST results are available for this feature:
BLAST of CV885035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM2_MUSSP4.526e-1536.30S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE4.526e-1536.30S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_MOUSE4.526e-1536.30S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_CAEEL7.721e-1534.93S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_XENLA3.244e-1335.56S-adenosylmethionine decarboxylase proenzyme OS=Xe... [more]
DCAM_ONCVO4.684e-1231.84S-adenosylmethionine decarboxylase proenzyme OS=On... [more]
DCAM_TRYCR2.325e-1135.83S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885035 ID=CV885035; Name=CV885035; organism=Citrus sinensis; type=EST; length=846bp
TAATAATATGACTCTTATTATAAAAGAAGATACTGGTTTAACATCTACAT
CTCCGGAAATCCAACATAACAGAAATCCAAAAACATAAGACCTTGTTCAC
AATAACAGGAAAAATGCAGCAAAACGGAAAGGTAAAGGCTGCTCAAGCCC
TACCATTACATAACCCCACCACATTTTATTATATAAGCGAAGGATTAAAA
TGAAAAAAACAAACACGATATTATATCCGGGACACTATTTCCCTTCAACT
TCCTCGTCCTTCTCGTCCTCGCTCCAACAGCATTTCAAGATTGACCTAGG
AGATGTGGAGCAATCAGCCCTCGAAAAGCTGTAGTAGATCAGCGAACCAT
TATTACCGAGCTCTTCATATATCTTTTCTCCACAGGAATATCCCTTCAAG
TCCAGCATGAAGGTGTCTCCATGTTCATCGCCAACAATGTCAGAATGCAG
AGCAACAGAAAACTCAGCGGGTTTGAAGCAAGCAAGCACCCTCTCAAGCA
AGGGAGTCAACTTCACAACCTCAAAATCATAACCCACAGCCTCAAAACTT
GCATAACTGAAACCATCTTCAGGTGTGACGTGGATAGTAGATACTGCATC
CCCTTCAATACTATTCATGGAGTAACCACAAGGGTCAAACTCAAAATCAC
AAATCTCAGATTTTGGAAGAATCTTTCTGATGCCAGAGTCCTCGGTCATC
ATAGCGGCTGAGCTTTCATTAGTTTTGTAGAAGACAGATGCCCTCTTTCT
GTCCAAACCAGTCATGCACATCTCTAGAGTGTAAACTGGGTTTACATGGC
TTCCTGCTTCAGCAGAGGCAGAGTAAACATGCCATCTCTTTGTGTT
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