CV885026

Overview
NameCV885026
Unique NameCV885026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_ARCB4 (Chaperone protein dnaJ OS=Arcobacter butzleri (strain RM4018) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.337e-11
Identity = 53/161 (32.92%), Postives = 78/161 (48.45%), Query Frame = -2 
Query:  196 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD-----------------AGLYDPLEEEDEDFYGFVQEMVSM--MNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 621
            YY +L I +++  S I+ AY ++AMK+HPD   KNPG   EA+ +F+ I EAY VLSD+ K+S+YD                 +G +D L    E+ +GF     S           D   +++  F E V G + + NY    A + C    +G  AK G
Sbjct:    6 YYELLEISRNSDKSTIKKAYRQMAMKYHPD---KNPG-DNEAEEKFKAINEAYQVLSDDEKKSIYDRYGKAGLEGHGQRGGGFSGGFDDLGSIFEEMFGFGTSSRSRRERKTYNYNLDVTIEVKLEFNEAVFGCNKEINYKYKTACKPC----EGTGAKDG 158
The following BLAST results are available for this feature:
BLAST of CV885026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
DNAJ_ARCB48.337e-1132.92Chaperone protein dnaJ OS=Arcobacter butzleri (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885026 ID=CV885026; Name=CV885026; organism=Citrus sinensis; type=EST; length=814bp
TTTATAAAGAAAATATCACGGTCCAAATGCTAACACCCCCGAGATTTAAA
AAAAAAAAAAAATTCTTAAACTACCCACCCCCAACATAAGGGATTAATTT
GAAGATTAGAACAAAATGGGGGGAATTGATCAACAACATCATCATTAGCT
TGAATGATCAGAGATGATCCAGAGCGATTGTCAGCAACGAGAAGTACCGC
GCTTGGCCGCTTTACCCTTTGATGTGTTGACACATGCTCTTTGCGCGTCC
GTAGGATCATAATTAAAGTCGAAGCTCATCCCATCCACCATTTCCACGAA
CATCCTTTGGAGGTCCTCAAAACTGTCCCCCTCGTCTTTAACATTATTCA
TCATGGAGACCATCTCTTGCACAAAACCATAGAAGTCCTCATCTTCTTCC
TCAAGGGGATCATAGAGTCCAGCATCGTACATTGACCTCTTGTTCTCATC
AGAGAGGACGGAGTAAGCTTCTTGAATTTGCTGAAACCGGCATTTGGCTT
CCCCGGCCACTCCCGGGTTCTTCGCACTCCTATCCGGATGCCATTTCATG
GCGAGCTTGTGATAAGCGGAGCGAATGTCAGAGAAGGAGGCGTCCTTGCG
AATCCCAAGAATCGCGTAGTAGCTCAAAGATCCGCCGTTGGATCCTCCTC
CTCCATCCATCACAGCAACCAAAAAAGAAAACAGCAATAAGGATGTAATA
TGCTTGTCAAGATAAAATCATATGAAGAAACGGAAACAAACTGTTATGAA
GAGAGCATTTAGAGGATTGATAAAGCAGAGAAAAATAAAGGAATATTTTG
GTTTCTCCTTTTTT
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