CV885026

Overview
NameCV885026
Unique NameCV885026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJB7_HUMAN (DnaJ homolog subfamily B member 7 OS=Homo sapiens GN=DNAJB7 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.061e-13
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  373 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----EDEDFYGF 621
            YY +LG+++ AS  DI+ AYHK+A+KWHPD   KNP    EA+ +F+++ EAY VLS++ KR +YD    + L       +DE  YGF
Sbjct:    4 YYEVLGLQRYASPEDIKKAYHKVALKWHPD---KNPENKEEAERKFKEVAEAYEVLSNDEKRDIYDKYGTEGLNGGGSHFDDECEYGF 88          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_THEM4 (Chaperone protein dnaJ OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.998e-13
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = -2
Query:  211 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFD--FNYDPTDAQRACVNTSKGK 621
            YY ILG+ ++A+  +IR AY KL  KWHPDR+ +N  +A E   +F++IQEAY VLSD  KR+MYD              +G+V ++             FED+ + F + ++   F+  F    T +++      KG+
Sbjct:    6 YYEILGVSRNATQEEIRQAYKKLIKKWHPDRNYENKKLAEE---KFKEIQEAYEVLSDPEKRAMYDK-------------FGYVGDVPPNAGGGFRGFGGFEDIFKDFGDFINNDIFNIFFGDQRTSSRKRTKTPRKGE 128          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJ6B_XENLA (DnaJ homolog subfamily B member 6-B OS=Xenopus laevis GN=dnajb6-B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+++++S  DI+ AY +LA+KWHPD   KNP    EA+ RF+++ EAY VLSD  KR +YD
Sbjct:    4 YYDVLGVQRNSSPDDIKKAYRRLALKWHPD---KNPDNKEEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGE (Chaperone protein dnaJ OS=Mycoplasma genitalium GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  319 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR-SAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSF 621
            YY +LGI K+AS  DI+ A+ KLAM++HPDR  A+N     + + +F+++ EAY VLSDE KR +YD   ++ L        GF      + N+V  EG SF
Sbjct:    8 YYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEAYEVLSDEEKRKLYDQFGHEGLNASGFHEAGF--NPFDIFNSVFGEGFSF 107          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJB6_MOUSE (DnaJ homolog subfamily B member 6 OS=Mus musculus GN=Dnajb6 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  247 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSF---EDLQRMFVEMVDGMSFDFNYDPTD 621
            YY +LG+++ AS  DI+ AY K A+KWHPD   KNP    EA+ +F+Q+ EAY VLSD  KR +YD       +   E   G         ++  + G +F   +D+ R F    D  SFDF  DP D
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD-------KYGKEGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFD 121          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJB3_MACFU (DnaJ homolog subfamily B member 3 OS=Macaca fuscata fuscata GN=DNAJB3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 51/150 (34.00%), Postives = 70/150 (46.67%), Query Frame = -2
Query:  202 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD----------AGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAK 621
            YY +LG++      DI+ AY KLA+KWHPD   KNP    EA+ RF+Q+ EAY VLSD  KR +YD            +  P E+  E  + F           +D  + F    R F    D  SFDF  +P +        S+G  ++
Sbjct:    4 YYEVLGVQVQRFPEDIKKAYRKLALKWHPD---KNPDNKEEAERRFKQVAEAYEVLSDAKKRDVYDRYGEAGAEGSCAVGRPFEDPFEYIFSF-----------RDPAEVF----REFFGGQDPFSFDFFGNPLENILGSRRNSRGSRSR 135          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJB3_MOUSE (DnaJ homolog subfamily B member 3 OS=Mus musculus GN=Dnajb3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ + AS   IR AY KLA+KWHPD   KNP    EA+ RF+Q+ +AY VLSD  KR +YD
Sbjct:    4 YYEVLGVPRQASAEAIRKAYRKLALKWHPD---KNPEHKEEAERRFKQVAQAYEVLSDVRKREVYD 66          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_THEAB (Chaperone protein dnaJ OS=Thermosipho africanus (strain TCF52B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY ILG+ ++AS  +IR AY +L  KWHPDR+ +N     EA+ +F++IQEAY VLSD  KR+MYD
Sbjct:    6 YYEILGVSRNASQEEIRQAYKQLIKKWHPDRNHQN---RKEAEEKFKEIQEAYEVLSDPEKRAMYD 68          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_METCA (Chaperone protein dnaJ OS=Methylococcus capsulatus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY  LG+ ++AS SDI+ A+ +LAMK+HPDR+  NP    EA+ RF+ ++EAY VLSD  KRS YD
Sbjct:    6 YYETLGVPRNASDSDIKKAFRRLAMKYHPDRNKDNP----EAEERFKSVKEAYDVLSDPKKRSAYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIAD (Chaperone protein dnaJ OS=Acinetobacter sp. (strain ADP1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ K AS  +I+ AY KLAMK+HPDR+  N     EA+ +F++  EAY VLSD  KRSMYD
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDN----AEAEDKFKEASEAYEVLSDSEKRSMYD 67          
The following BLAST results are available for this feature:
BLAST of CV885026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
DNJB7_HUMAN3.061e-1345.45DnaJ homolog subfamily B member 7 OS=Homo sapiens ... [more]
DNAJ_THEM43.998e-1333.81Chaperone protein dnaJ OS=Thermosipho melanesiensi... [more]
DNJ6B_XENLA5.222e-1351.52DnaJ homolog subfamily B member 6-B OS=Xenopus lae... [more]
DNAJ_MYCGE5.222e-1342.16Chaperone protein dnaJ OS=Mycoplasma genitalium GN... [more]
DNJB6_MOUSE6.820e-1339.06DnaJ homolog subfamily B member 6 OS=Mus musculus ... [more]
DNJB3_MACFU8.907e-1334.00DnaJ homolog subfamily B member 3 OS=Macaca fuscat... [more]
DNJB3_MOUSE1.163e-1254.55DnaJ homolog subfamily B member 3 OS=Mus musculus ... [more]
DNAJ_THEAB1.163e-1254.55Chaperone protein dnaJ OS=Thermosipho africanus (s... [more]
DNAJ_METCA1.163e-1254.55Chaperone protein dnaJ OS=Methylococcus capsulatus... [more]
DNAJ_ACIAD1.163e-1254.55Chaperone protein dnaJ OS=Acinetobacter sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885026 ID=CV885026; Name=CV885026; organism=Citrus sinensis; type=EST; length=814bp
TTTATAAAGAAAATATCACGGTCCAAATGCTAACACCCCCGAGATTTAAA
AAAAAAAAAAAATTCTTAAACTACCCACCCCCAACATAAGGGATTAATTT
GAAGATTAGAACAAAATGGGGGGAATTGATCAACAACATCATCATTAGCT
TGAATGATCAGAGATGATCCAGAGCGATTGTCAGCAACGAGAAGTACCGC
GCTTGGCCGCTTTACCCTTTGATGTGTTGACACATGCTCTTTGCGCGTCC
GTAGGATCATAATTAAAGTCGAAGCTCATCCCATCCACCATTTCCACGAA
CATCCTTTGGAGGTCCTCAAAACTGTCCCCCTCGTCTTTAACATTATTCA
TCATGGAGACCATCTCTTGCACAAAACCATAGAAGTCCTCATCTTCTTCC
TCAAGGGGATCATAGAGTCCAGCATCGTACATTGACCTCTTGTTCTCATC
AGAGAGGACGGAGTAAGCTTCTTGAATTTGCTGAAACCGGCATTTGGCTT
CCCCGGCCACTCCCGGGTTCTTCGCACTCCTATCCGGATGCCATTTCATG
GCGAGCTTGTGATAAGCGGAGCGAATGTCAGAGAAGGAGGCGTCCTTGCG
AATCCCAAGAATCGCGTAGTAGCTCAAAGATCCGCCGTTGGATCCTCCTC
CTCCATCCATCACAGCAACCAAAAAAGAAAACAGCAATAAGGATGTAATA
TGCTTGTCAAGATAAAATCATATGAAGAAACGGAAACAAACTGTTATGAA
GAGAGCATTTAGAGGATTGATAAAGCAGAGAAAAATAAAGGAATATTTTG
GTTTCTCCTTTTTT
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