CV885026

Overview
NameCV885026
Unique NameCV885026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_BORA1 (Chaperone protein dnaJ OS=Bordetella avium (strain 197N) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ KDA+  +++ AY KLAMK+HPDR   NPG   EA+ +F++ +EAY VL DE KR+ YD
Sbjct:    6 YYEVLGVAKDAADDELKKAYRKLAMKYHPDR---NPG-NKEAEEKFKEAKEAYEVLGDEQKRAAYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCPN (Chaperone protein dnaJ OS=Mycoplasma pneumoniae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = -2
Query:  265 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR-SAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDF 621
            YY +LG+ + A+  DI+ A+ KLAM++HPDR   +   V  + + +F+++ EAY VLSD  KR MYD   ++ L        GF      + N+V  EG SF        +M  G  FDF
Sbjct:    8 YYEVLGVSRSATAQDIKRAFRKLAMQYHPDRHKGEGETVQKQNEEKFKEVNEAYEVLSDTEKRGMYDRFGHEGLNASGFHETGF--NPFDIFNSVFGEGFSF--------DMDGGSPFDF 117          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_HYDTH (Chaperone protein dnaJ OS=Hydrogenobacter thermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = -2
Query:  256 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMM-------NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYD 621
            YY ILG+ KDA+  +I+ AY +LA ++HPD SA        A  +F++I EAY +LSDE +R  YD  L    E+   DF  ++Q+ +  +          K  GD    L+    E   G   D  Y+
Sbjct:    6 YYQILGVSKDATAEEIKKAYRRLAKEYHPDISADE-----NASEKFKEINEAYHILSDEERRKEYDRILKSGDEKSYRDFMEYIQDFLESIWQGMRRSPKPKKGGDVRLKLELTLEEAAFGCEKDIEYE 129          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_CLONN (Chaperone protein dnaJ OS=Clostridium novyi (strain NT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = -2
Query:  319 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSF 621
            YY +LG+ K AS  +I+ AY KLAMK+HPDR+  N     EA+ +F+ I EAY VLSD  K++ YD   +   +     F GF     S M   +D  DSF
Sbjct:    6 YYEVLGLSKGASDDEIKKAYRKLAMKYHPDRNQGNK----EAEEKFKDINEAYQVLSDPQKKANYDQ--FGSADFNGGGFGGFGGGGFSGMGGFEDIFDSF 100          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJB7_MOUSE (DnaJ homolog subfamily B member 7 OS=Mus musculus GN=Dnajb7 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+++ AS  DI+ AY K+A+KWHPD   KNP    EA+ +F+++ EAY VLS+  KR +YD
Sbjct:    4 YYEVLGVQRYASPEDIKRAYRKVALKWHPD---KNPENKEEAERKFKEVAEAYEVLSNVEKRDIYD 66          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJA3_MOUSE (DnaJ homolog subfamily A member 3, mitochondrial OS=Mus musculus GN=Dnaja3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = -2
Query:  421 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 621
            YY ILG+ ++AS  DI+ AY++LA K+HPD +  +P    +AK +F Q+ EAY VLSDE KR  YDA
Sbjct:   94 YYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDA 156          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_DICNV (Chaperone protein dnaJ OS=Dichelobacter nodosus (strain VCS1703A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = -2
Query:  409 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 618
            YAILG+ + A+  +I+ AY KL+MKWHPDR   NP    EA+ +F++I +AY +LSD  KR+ YD   +D
Sbjct:    7 YAILGVCRTANQDEIKKAYRKLSMKWHPDR---NPNNKEEAEEKFKEINKAYEILSDSQKRASYDRFGFD 73          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCV (Chaperone protein dnaJ OS=Chlamydophila caviae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ K AS  +I+ +Y KLA+K+HPD   KNPG A EA+ RF+++ EAY VLSD  KR  YD
Sbjct:    3 YYDVLGVSKTASPEEIKKSYRKLAVKYHPD---KNPGDA-EAEKRFKEVSEAYEVLSDPQKRESYD 64          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLAB (Chaperone protein dnaJ OS=Chlamydophila abortus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ K AS  +I+ +Y KLA+K+HPD   KNPG A EA+ RF+++ EAY VLSD  KR  YD
Sbjct:    3 YYDVLGVSKTASPEEIKKSYRKLAVKYHPD---KNPGDA-EAEKRFKEVSEAYEVLSDPQKRESYD 64          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_BORPE (Chaperone protein dnaJ OS=Bordetella pertussis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ K+AS  D++ AY KLAMK+HPDR   NP  + EA+ +F++ +EAY VL DE KR+ YD
Sbjct:    6 YYEVLGVAKNASDEDLKKAYRKLAMKYHPDR---NPD-SKEAEEKFKEAKEAYEVLGDEQKRAAYD 67          
The following BLAST results are available for this feature:
BLAST of CV885026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
DNAJ_BORA17.540e-1253.03Chaperone protein dnaJ OS=Bordetella avium (strain... [more]
DNAJ_MYCPN9.848e-1236.67Chaperone protein dnaJ OS=Mycoplasma pneumoniae GN... [more]
DNAJ_HYDTH9.848e-1234.11Chaperone protein dnaJ OS=Hydrogenobacter thermoph... [more]
DNAJ_CLONN9.848e-1242.57Chaperone protein dnaJ OS=Clostridium novyi (strai... [more]
DNJB7_MOUSE1.286e-1150.00DnaJ homolog subfamily B member 7 OS=Mus musculus ... [more]
DNJA3_MOUSE1.286e-1152.24DnaJ homolog subfamily A member 3, mitochondrial O... [more]
DNAJ_DICNV1.286e-1148.57Chaperone protein dnaJ OS=Dichelobacter nodosus (s... [more]
DNAJ_CHLCV1.286e-1154.55Chaperone protein dnaJ OS=Chlamydophila caviae GN=... [more]
DNAJ_CHLAB1.286e-1154.55Chaperone protein dnaJ OS=Chlamydophila abortus GN... [more]
DNAJ_BORPE1.286e-1153.03Chaperone protein dnaJ OS=Bordetella pertussis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885026 ID=CV885026; Name=CV885026; organism=Citrus sinensis; type=EST; length=814bp
TTTATAAAGAAAATATCACGGTCCAAATGCTAACACCCCCGAGATTTAAA
AAAAAAAAAAAATTCTTAAACTACCCACCCCCAACATAAGGGATTAATTT
GAAGATTAGAACAAAATGGGGGGAATTGATCAACAACATCATCATTAGCT
TGAATGATCAGAGATGATCCAGAGCGATTGTCAGCAACGAGAAGTACCGC
GCTTGGCCGCTTTACCCTTTGATGTGTTGACACATGCTCTTTGCGCGTCC
GTAGGATCATAATTAAAGTCGAAGCTCATCCCATCCACCATTTCCACGAA
CATCCTTTGGAGGTCCTCAAAACTGTCCCCCTCGTCTTTAACATTATTCA
TCATGGAGACCATCTCTTGCACAAAACCATAGAAGTCCTCATCTTCTTCC
TCAAGGGGATCATAGAGTCCAGCATCGTACATTGACCTCTTGTTCTCATC
AGAGAGGACGGAGTAAGCTTCTTGAATTTGCTGAAACCGGCATTTGGCTT
CCCCGGCCACTCCCGGGTTCTTCGCACTCCTATCCGGATGCCATTTCATG
GCGAGCTTGTGATAAGCGGAGCGAATGTCAGAGAAGGAGGCGTCCTTGCG
AATCCCAAGAATCGCGTAGTAGCTCAAAGATCCGCCGTTGGATCCTCCTC
CTCCATCCATCACAGCAACCAAAAAAGAAAACAGCAATAAGGATGTAATA
TGCTTGTCAAGATAAAATCATATGAAGAAACGGAAACAAACTGTTATGAA
GAGAGCATTTAGAGGATTGATAAAGCAGAGAAAAATAAAGGAATATTTTG
GTTTCTCCTTTTTT
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