CV885026

Overview
NameCV885026
Unique NameCV885026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885026_ssr643 microsatellite CV885026_ssr643:643..654. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4437 contig Csv1_Contig4437:104..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DJC21_DANRE (DnaJ homolog subfamily C member 21 OS=Danio rerio GN=dnajc21 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            +Y +LG+++DAS  D++ AY KLA+KWHPD++  N   A +A  +F+ IQ AY VLSD  +R+ YD
Sbjct:    4 HYEVLGVKRDASDDDLKKAYRKLALKWHPDKNLDN---AEDAAEQFKLIQAAYDVLSDPQERAWYD 66          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_TREDE (Chaperone protein dnaJ OS=Treponema denticola GN=dnaJ PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 59/179 (32.96%), Postives = 80/179 (44.69%), Query Frame = -2
Query:  184 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD------------AGLYDPLEEED-EDFYGFVQEMVSMMNNVKDEGDSFE-------------------DLQRMFVEMVDGMSFDFNYDPTDAQRACVNT-SKGKAAKRGTSRC 621
            YY +LG+ K AS  DI+ AY KLA+K+HPD   KN G    A+ +F++  EAY +L DE KRSMYD             G YDP   +  ED +G       +  N+   G S                     DLQ  FV+ V G   + +Y   +    C  T S+  ++KR    C
Sbjct:    8 YYEVLGVDKKASNDDIKKAYRKLAIKYHPD---KNQGDKA-AEEKFKEATEAYEILIDEKKRSMYDQFGHAGVDGMSGGGGYDPSAFQGFEDIFG--GSFSDIFENLFGGGFSSRSSGFGGRHAGPVRGSNLRYDLQISFVDAVYGKKAELSYTRNEKCSECHGTGSESGSSKRMCPDC 180          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEHT (Chaperone protein dnaJ OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ KDAS  DI+ AY +LAMK+HPDR++ +     E + +F++++EAY +L+D  KR  YD
Sbjct:    6 YYEVLGVSKDASERDIKKAYKRLAMKYHPDRTSGDK----ELETKFKEVKEAYEILTDAQKRQTYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMF (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMB (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup B GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMA (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup A GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIM0 (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup C (strain 053442) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            +YA LG+ + A+  +I+ AY KLAMK+HPDR+  N     EA+ +F+++Q+AY  LSD+ KR+MYD
Sbjct:    6 FYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNK----EAEEKFKEVQKAYETLSDKEKRAMYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_MARMM (Chaperone protein dnaJ OS=Maricaulis maris (strain MCS10) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            +Y +LG+ K A    ++SAY K AMK+HPDR   NPG A EA+ +F+ + EAYSVLSD NKR+ YD
Sbjct:    6 FYEVLGVDKTADEKTLKSAYRKQAMKYHPDR---NPGDA-EAEAQFKVVGEAYSVLSDPNKRAAYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_BURM1 (Chaperone protein dnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG+ K+AS  +I+ AY KLAMK+HPDR+  N     +A+  F++++EAY +LSD  KR+ YD
Sbjct:    6 YYEVLGVAKNASDDEIKKAYRKLAMKYHPDRNPDNK----DAEEHFKEVKEAYEMLSDSQKRAAYD 67          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJA3_HUMAN (DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.742e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = -2
Query:  421 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 621
            YY ILG+ ++AS  +I+ AY++LA K+HPD +  +P    +AK +F Q+ EAY VLSDE KR  YDA
Sbjct:   94 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDA 156          
The following BLAST results are available for this feature:
BLAST of CV885026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
DJC21_DANRE2.194e-1148.48DnaJ homolog subfamily C member 21 OS=Danio rerio ... [more]
DNAJ_TREDE2.865e-1132.96Chaperone protein dnaJ OS=Treponema denticola GN=d... [more]
DNAJ_PSEHT2.865e-1146.97Chaperone protein dnaJ OS=Pseudoalteromonas halopl... [more]
DNAJ_NEIMF2.865e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMB2.865e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMA2.865e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIM02.865e-1148.48Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_MARMM2.865e-1154.55Chaperone protein dnaJ OS=Maricaulis maris (strain... [more]
DNAJ_BURM12.865e-1148.48Chaperone protein dnaJ OS=Burkholderia multivorans... [more]
DNJA3_HUMAN3.742e-1150.75DnaJ homolog subfamily A member 3, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885026 ID=CV885026; Name=CV885026; organism=Citrus sinensis; type=EST; length=814bp
TTTATAAAGAAAATATCACGGTCCAAATGCTAACACCCCCGAGATTTAAA
AAAAAAAAAAAATTCTTAAACTACCCACCCCCAACATAAGGGATTAATTT
GAAGATTAGAACAAAATGGGGGGAATTGATCAACAACATCATCATTAGCT
TGAATGATCAGAGATGATCCAGAGCGATTGTCAGCAACGAGAAGTACCGC
GCTTGGCCGCTTTACCCTTTGATGTGTTGACACATGCTCTTTGCGCGTCC
GTAGGATCATAATTAAAGTCGAAGCTCATCCCATCCACCATTTCCACGAA
CATCCTTTGGAGGTCCTCAAAACTGTCCCCCTCGTCTTTAACATTATTCA
TCATGGAGACCATCTCTTGCACAAAACCATAGAAGTCCTCATCTTCTTCC
TCAAGGGGATCATAGAGTCCAGCATCGTACATTGACCTCTTGTTCTCATC
AGAGAGGACGGAGTAAGCTTCTTGAATTTGCTGAAACCGGCATTTGGCTT
CCCCGGCCACTCCCGGGTTCTTCGCACTCCTATCCGGATGCCATTTCATG
GCGAGCTTGTGATAAGCGGAGCGAATGTCAGAGAAGGAGGCGTCCTTGCG
AATCCCAAGAATCGCGTAGTAGCTCAAAGATCCGCCGTTGGATCCTCCTC
CTCCATCCATCACAGCAACCAAAAAAGAAAACAGCAATAAGGATGTAATA
TGCTTGTCAAGATAAAATCATATGAAGAAACGGAAACAAACTGTTATGAA
GAGAGCATTTAGAGGATTGATAAAGCAGAGAAAAATAAAGGAATATTTTG
GTTTCTCCTTTTTT
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