CX043267

Overview
NameCX043267
Unique NameCX043267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043267_ssr584 microsatellite CX043267_ssr584:584..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8720 contig Csv1_Contig8720:215..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_CAEEL (Protein CWC15 homolog OS=Caenorhabditis elegans GN=T10C6.5 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = -1 
Query:  277 LLVGNPLLNNPTS--------FNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN+  +        F VKRRWDDDVVFKN A+G  E K    FIND IR++FH+KF+ KY+K
Sbjct:  162 ILAGNPLLNDTPAGSSTSGGDFTVKRRWDDDVVFKNCAKGVEERKKEVTFINDAIRSEFHKKFMDKYIK 230
The following BLAST results are available for this feature:
BLAST of CX043267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CWC15_CAEEL1.216e-1255.07Protein CWC15 homolog OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A02-B4-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043267 ID=CX043267; Name=CX043267; organism=Citrus sinensis; type=EST; length=834bp
GCCCCCCAAAAATCTTTACAATAGCCCAAATGTTAACTAGCACTTAATCA
CCATAAGTGTTAACAGTGTTTCAGTAATCAGTCAACTCATTGAAAACAAT
TACAGCTTCATATTCTCATATATTGCTGCAGATGTTTGGCTCTTACTACA
TGGTAGCCCTCAAATTCAAACCCAGAGTCAATGACTAATACAAACAAGGA
TTTAAACCAAGGTCTTTTTCTTTGATTGAAGCAGTAAAACTTGGCCCTTC
ACCTCAAATTTACTTCAGCGAAGCTACTTCATGTATTTCTGTAAGAATTT
CCTGTGGAAGTCATTCCTGATAGTGTCATTGATGAAGCGCTTGGGAGTCT
TGGTTTCACCACGGGCTTGGTTCTTGAAAACCACATCGTCATCCCACCTT
CTTTTCACATTAAAGGATGTTGGATTATTCAGCAATGGATTTCCTACAAG
AAGCTCTGATTCCTTGGCTTTAGCCTCTTCTTCCCACTGTTCTTTTTCCT
TCCGGAGCTTCTCCTCCGCTCTTTCCTTCTTTATTAGTTCAAGCTCAGCC
AAAAGTGCTTCAGTGTCATCCTCATCATCGTCGTCATCATCATCACTCTC
ATCATCACTTTTGACTTCGACATCAGAATCATCAGCATCTATGCTACGTG
GAGCAGCACGGTCCTCCATATCCCTCTTTGTCCCTTCCAACAAAAGATGG
CTACTCTTCCGACGATCTCTGTCATCATTGTAGGACTTATCCTTAGATGA
GAAATGTCTCCGTTCACGCTCTTCTAGCTCATGCCGGAGGTTCCTTTTCT
GTAATTCATCTTTGGTATCTTGTCCTTCTTTTCT
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