CV884994

Overview
NameCV884994
Unique NameCV884994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL5_ARATH (Probable metal-nicotianamine transporter YSL5 OS=Arabidopsis thaliana GN=YSL5 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.757e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 2
Query:   26 PLIEKIAAVNDEEEEADQP-----------IPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            P  EK+   N EE+E ++            +P WK Q+T+R  V S ++  LF  I  KLNLT GIIPSLNV+AGLLGFF VK+WT  L + G   +PFTRQENTVIQTCVVA  G+AFSG
Sbjct:   26 PETEKVKNKNFEEDEEEEDESVEKIFESREVPSWKKQLTVRAFVVSFMLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKMLHRSGLLKQPFTRQENTVIQTCVVASSGIAFSG 146          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL3_ARATH (Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.676e-28
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 2
Query:   14 EVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            E+   +I+ +    +E ++  + IP WK+QIT RG+VAS I+G ++ +I  KLNLT G++P+LNV+A LL F  ++SWT  L+K G   KPFT+QENTV+QTC VACY +A  G
Sbjct:   13 EIEREVIDDLEETQNEGDDF-KSIPPWKEQITFRGIVASLIIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFLRSWTKLLTKAGIVTKPFTKQENTVVQTCAVACYSIAVGG 125          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL8_ARATH (Probable metal-nicotianamine transporter YSL8 OS=Arabidopsis thaliana GN=YSL8 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 8.719e-28
Identity = 63/106 (59.43%), Postives = 74/106 (69.81%), Query Frame = 2
Query:   56 DEEEEA------DQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            +E+EE+       + +P WK Q+TIR  V S  +  LF  I  KLNLT GIIPSLNV+AGLLGFF VK+WT  L K G   +PFTRQENTVIQTCVVA  G+AFSG
Sbjct:   50 EEQEESVEGIFESREVPSWKKQLTIRAFVVSFALSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKMLHKSGLLKQPFTRQENTVIQTCVVASSGIAFSG 155          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL5_ORYSJ (Probable metal-nicotianamine transporter YSL5 OS=Oryza sativa subsp. japonica GN=YSL5 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.139e-27
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 2
Query:   80 PIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSI---KPFTRQENTVIQTCVVACYGLAFSG 355
            P+P W+DQ+T+RG+  +A++G+L C++ H+LNLTVG+IP+LNVA+GLL FFL  +W    + LG      +PFTRQENTVIQTC +AC  LAFSG
Sbjct:   19 PLPPWRDQLTLRGVAVAAVLGSLLCVVIHRLNLTVGVIPALNVASGLLAFFLATAWRGAAAVLGLGHHRGRPFTRQENTVIQTCAIACGSLAFSG 113          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL15_ORYSJ (Iron-phytosiderophore transporter YSL15 OS=Oryza sativa subsp. japonica GN=YSL15 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.327e-27
Identity = 54/113 (47.79%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   38 KIAAVNDEEEEAD-------QPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            +I +++DE+ EAD       + +  W++Q+T RG+VA+A++G +F +I  K+ LT G++P+LN++A LL F  ++ WT  L +LGFS +PFTRQENTV+QTC VACY +AF G
Sbjct:   14 EIGSLHDEDAEADPARAREMERLQPWREQVTARGVVAAALIGFVFSVIVMKIALTTGLVPTLNISAALLAFLALRGWTRALERLGFSPRPFTRQENTVVQTCAVACYTIAFGG 126          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL9_ORYSJ (Probable metal-nicotianamine transporter YSL9 OS=Oryza sativa subsp. japonica GN=YSL9 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 9.640e-27
Identity = 58/125 (46.40%), Postives = 85/125 (68.00%), Query Frame = 2
Query:    8 EVEVSEPLIEKIAAVN---DEEEEADQPI------PEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            E+ V+ P  E++A ++   D EE A          P W++Q+T RGLVAS  +G ++ +I  KLNLT G++P+LNV+A L+ F +++ WT  L++LGF+ +PFTRQENTV+QTC VACY +A  G
Sbjct:   17 ELVVAHPREEEMAGLDGGGDAEEGATHARGGGGAPPPWREQLTARGLVASLAVGAMYSVIVMKLNLTTGLVPTLNVSAALIAFVVLRGWTQALARLGFAARPFTRQENTVVQTCAVACYSIAVGG 141          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL1_ARATH (Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 2
Query:    2 GTEVEVSEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            G E E +  L  +    + EEE + + I  W  QIT+RG+  S ++G +F +I  KLNLT GI+P+LN +A LL F  V++WT  L K GF  KPFTRQENT+IQT  VACYG+A  G
Sbjct:   13 GEEEEDNNQLSLQEEEPDTEEEMSGRTIEPWTKQITVRGVFVSIVIGVVFSVIAQKLNLTTGIVPNLNSSAALLAFVFVQTWTKILKKSGFVAKPFTRQENTMIQTSAVACYGIAVGG 130          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL18_ORYSJ (Probable metal-nicotianamine transporter YSL18 OS=Oryza sativa subsp. japonica GN=YSL18 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 2
Query:   77 QPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            QP+P W +Q+T+R +VAS  +G     +   L  T GIIPSLN++AGLLGFFL+K+WT  L +LG   +PFTRQEN V+QTCVVAC  + +SG
Sbjct:   20 QPVPPWTEQVTLRAVVASVALGVALSSVMMNLVFTSGIIPSLNISAGLLGFFLLKAWTRLLDQLGSPGRPFTRQENAVVQTCVVACASMTYSG 112          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YSL16_ORYSJ (Probable metal-nicotianamine transporter YSL16 OS=Oryza sativa subsp. japonica GN=YSL16 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.909e-25
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   20 SEPLIEKIAAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            SEP +   AA  + E      +P W++Q+T RG+VA+ ++G ++ +I  KL+LT G+IP+LNV+A LL F  ++ WT  L +LG + +PFTRQENTVIQTC VACY + + G
Sbjct:   26 SEPAL---AAAREAER-----VPPWREQVTARGMVAALLIGVVYTVIVMKLSLTTGLIPTLNVSAALLAFLALRGWTHALDRLGIASRPFTRQENTVIQTCAVACYTIGYGG 129          
BLAST of CV884994 vs. ExPASy Swiss-Prot
Match: YS1_MAIZE (Iron-phytosiderophore transporter yellow stripe 1 OS=Zea mays GN=YS1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 52/120 (43.33%), Postives = 83/120 (69.17%), Query Frame = 2
Query:    8 EVEVSEPLIEKI----AAVNDEEEEADQPIPEWKDQITIRGLVASAIMGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTSFLSKLGFSIKPFTRQENTVIQTCVVACYGLAFSG 355
            E+E  EP  E +    AA  ++E E ++ +  W++Q+T+RG+VA+ ++G ++ +I  K+ LT G++P+LNV+A L+ F  ++ WT  L +LG + +PFTRQEN VI+TC VACY +AF G
Sbjct:   17 EIERHEPAPEDMESDPAAAREKELELER-VQSWREQVTLRGVVAALLIGFMYSVIVMKIALTTGLVPTLNVSAALMAFLALRGWTRVLERLGVAHRPFTRQENCVIETCAVACYTIAFGG 135          
The following BLAST results are available for this feature:
BLAST of CV884994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YSL5_ARATH1.757e-2853.72Probable metal-nicotianamine transporter YSL5 OS=A... [more]
YSL3_ARATH6.676e-2849.12Metal-nicotianamine transporter YSL3 OS=Arabidopsi... [more]
YSL8_ARATH8.719e-2859.43Probable metal-nicotianamine transporter YSL8 OS=A... [more]
YSL5_ORYSJ1.139e-2756.84Probable metal-nicotianamine transporter YSL5 OS=O... [more]
YSL15_ORYSJ4.327e-2747.79Iron-phytosiderophore transporter YSL15 OS=Oryza s... [more]
YSL9_ORYSJ9.640e-2746.40Probable metal-nicotianamine transporter YSL9 OS=O... [more]
YSL1_ARATH3.663e-2649.15Metal-nicotianamine transporter YSL1 OS=Arabidopsi... [more]
YSL18_ORYSJ6.909e-2554.84Probable metal-nicotianamine transporter YSL18 OS=... [more]
YSL16_ORYSJ6.909e-2547.32Probable metal-nicotianamine transporter YSL16 OS=... [more]
YS1_MAIZE1.539e-2443.33Iron-phytosiderophore transporter yellow stripe 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884994 ID=CV884994; Name=CV884994; organism=Citrus sinensis; type=EST; length=576bp
GGGAACCGAAGTAGAAGTGTCAGAGCCGTTGATTGAGAAGATCGCGGCCG
TTAATGACGAGGAGGAGGAAGCGGATCAGCCGATTCCGGAATGGAAGGAT
CAGATAACGATCAGAGGGCTGGTGGCGAGCGCGATTATGGGGACGCTCTT
CTGCATCATCACGCACAAGCTCAATCTGACGGTCGGAATTATTCCGTCGC
TCAACGTTGCCGCGGGACTGTTAGGCTTCTTCCTCGTGAAGTCGTGGACG
AGCTTCTTGTCGAAGCTAGGGTTTTCGATTAAGCCTTTTACGAGACAAGA
GAACACCGTCATTCAAACTTGTGTGGTAGCTTGTTATGGCCTCGCTTTTA
GCGGTAATGATTAGTCAATTAATATGTGTTTATTAATCAATTAATCATTT
AGCGGTGTTTGTACTTGCGTTTGATTCTCAAAAAAGTCATAAAAGGGGAG
TCTTTGATTGGTGCTTCTTGAGATGGAGCTTTAAGATCGTATAGTGGAAA
ACGACTTTAGATGCTCTTGTAGAATTGTACCTCTTCAAACATTTTCGACA
AAAAGTACTTCTTAATGCACCCGCGA
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