CV884993

Overview
NameCV884993
Unique NameCV884993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = -3
Query:  524 KKKIMIGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDAN-TKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTW 826
            K KI    VK ++  K   SV CH+  +P+ ++YCH      VY   +   N  +AK    VA+CH +TSAW+P H AF  L   PG + VCH++ E  + W
Sbjct:  294 KYKIAAAGVKKLSDDK---SVVCHKQKYPFAVFYCHKAMMTTVYAVPLEGENGMRAK---AVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.470e-11
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = -3
Query:  521 VSCHQSLFPYLLYYCH-SVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWT 766
            ++CH   +PY ++ CH +    R Y+A ++  +  A     VA+CH DTS W+P H AF  LG  PG + VCH++  + + WT
Sbjct:  502 IACHPESYPYAVFMCHLTEATTRAYKASLVGKDGTAV--EAVAVCHTDTSDWNPEHAAFHVLGVKPGTVPVCHFMQPDAVVWT 582          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = -3
Query:  524 SVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTW 805
            +V+ + GG V   V+CH   +PY +Y CH+    R Y  D+  A     +    A+CH DTS W+P H +F  LG+ PG   VCH +    + W
Sbjct:  263 AVQPVEGGPVF--VACHDEAYPYTVYRCHTTGPSRAYTVDMEGARGADAVTIA-AVCHTDTSLWNPEHVSFKLLGTKPGGTPVCHLMPYGHIIW 353          
BLAST of CV884993 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = -3
Query:  524 IGSVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADVLDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTW 811
            + SV+ + GG V   V+CH   +PY +Y CH+    R Y  D+  A     +     +CH DTS W+P H +F  LG+ PG   VCH +    + W
Sbjct:  288 VRSVRPVEGGPVF--VACHDEAYPYTVYRCHTTGPSRAYMVDMEGARGGDAVTIAT-VCHTDTSLWNPEHVSFKLLGTKPGGTPVCHLMPYGHIIW 380          
The following BLAST results are available for this feature:
BLAST of CV884993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RD22_ARATH1.018e-1238.24Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURPH_ORYSJ1.470e-1137.35BURP domain-containing protein 17 OS=Oryza sativa ... [more]
RAF1B_WHEAT2.507e-1136.17Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
RAF1A_WHEAT3.274e-1135.42Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884993 ID=CV884993; Name=CV884993; organism=Citrus sinensis; type=EST; length=888bp
TTTATTCGTGTATTATAAACACTTACATTGCAAAGAGTGTACAAAATATA
ACTAAAAAAGCTGAAATACAATAAATCATATGCAGAAGGCGGTAAGAAGA
AAAATCACATTGAAATGGAAATTCTACACTTGGGTGTATCTGAATTTTAT
TTTTAATATATATATTTGAAAAATACCACTAAAAAAAAAACAACAGATTA
GGATGAGGAAGTATCCACCAATCGTAAGAGCAAGAGAAGAGAAATATGCC
TCCCATCCTATCCACTCCAACAACAATTCCAATTGTTAACCATTTGTACA
CTTCCTCTTGTTTTGGTGCTCAAATTGATATTTTATATAAATTATATATT
ATGAAATTGCATTAACAAGCACTAATAAATAAGCCTCTACTCTTCTTATC
GTCATCGATACGCTGAATTATATAGATGGGATAGCATGAGCTGGACCCAC
AGCTAAGTTATCTTAGCAAATGGCTCGAACCCACGTCCACATGACCTGAC
CCAAATGGCTAATCAGCCGTGGTCCAAGTCATATCATTCTCAAAAATCCA
GTGGCAAACCTCGATCTTCCCAGGACCCGAACCCAAAGCCAAGAAGGCTC
CGTGGGTCGGGCTCCAAGCTGAGGTATCCAAGTGACAGATGGCAACCCCG
TGATTGATCTTGGCTTTCGTGTTAGCATCCAAGACATCGGCTTCATACAC
GCGAACTTTAGGAACAGAGTGGCAGTAATAAAGCAGATAAGGAAACAAGC
TTTGATGACAAGAAACTGATTTAGTGACTTTACCACCGTTGATTCCTTTG
ACGGATCCGATCATGATCTTCTTCTTTGACCCATTCACATTCTCGGTTGT
ACGGACCACCACATTGCGGCCCAAAATGGAAGTGGCAA
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